TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F15%3A00080843" target="_blank" >RIV/00216224:14330/15:00080843 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1007/978-3-319-23231-7_56" target="_blank" >http://dx.doi.org/10.1007/978-3-319-23231-7_56</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/978-3-319-23231-7_56" target="_blank" >10.1007/978-3-319-23231-7_56</a>
Alternative languages
Result language
angličtina
Original language name
TRAgen: A Tool for Generation of Synthetic Time-Lapse Image Sequences of Living Cells
Original language description
In biomedical image processing, correct tracking of individual cells is important task for the study of dynamic cellular processes. It is, however, often difficult to decide whether obtained tracking results are correct or not. This is mainly due to complexity of the data that can show hundreds of cells, due to improper data sampling either in time or in space, or when the time-lapse sequence consists of blurred noisy images. This prohibits manual extraction of reliable ground truth (GT) data as well. Nonetheless, if reliable testing data with GT were available, one could compare the results of the examined tracking algorithm with the GT and assess its performance quantitatively. In this paper, we introduce a novel versatile tool capable of generating2D image sequences showing simulated living cell populations with GT for evaluation of biomedical tracking. The simulated events include namely cell motion, cell division, and cell clustering up to tissue-level density.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GA14-22461S" target="_blank" >GA14-22461S: Development and Study of Methods for Live Cell Quantification</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach
Others
Publication year
2015
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Proceedings of 18th International Conference on Image Analysis and Processing
ISBN
9783319232300
ISSN
0302-9743
e-ISSN
—
Number of pages
12
Pages from-to
623-634
Publisher name
Springer International Publishing
Place of publication
Heidelberg, Německo
Event location
Janov
Event date
Sep 9, 2015
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
000364991200056