AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F16%3A00089099" target="_blank" >RIV/00216224:14330/16:00089099 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1109/TVCG.2015.2467434" target="_blank" >http://dx.doi.org/10.1109/TVCG.2015.2467434</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1109/TVCG.2015.2467434" target="_blank" >10.1109/TVCG.2015.2467434</a>
Alternative languages
Result language
angličtina
Original language name
AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics
Original language description
In this paper we propose a novel method for the interactive exploration of protein tunnels. The basic principle of our approach is that we entirely abstract from the 3D/4D space the simulated phenomenon is embedded in. A complex 3D structure and its curvature information is represented only by a straightened tunnel centerline and its width profile. This representation focuses on a key aspect of the studied geometry and frees up graphical estate to key chemical and physical properties represented by surrounding amino acids. The method shows the detailed tunnel profile and its temporal aggregation. The profile is interactively linked with a visual overview of all amino acids which are lining the tunnel over time. In this overview, each amino acid is represented by a set of colored lines depicting the spatial and temporal impact of the amino acid on the corresponding tunnel. This representation clearly shows the importance of amino acids with respect to selected criteria.
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/7AMB15AT018" target="_blank" >7AMB15AT018: Visualization and importance-driven guidance through the dynamics of large molecular complexes</a><br>
Continuities
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)<br>S - Specificky vyzkum na vysokych skolach
Others
Publication year
2016
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
IEEE Transactions on Visualization and Computer Graphics
ISSN
1077-2626
e-ISSN
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Volume of the periodical
22
Issue of the periodical within the volume
1
Country of publishing house
US - UNITED STATES
Number of pages
10
Pages from-to
747-756
UT code for WoS article
000364043400080
EID of the result in the Scopus database
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