PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14740%2F18%3A00106678" target="_blank" >RIV/00216224:14740/18:00106678 - isvavai.cz</a>
Result on the web
<a href="http://dx.doi.org/10.1093/nar/gkx1070" target="_blank" >http://dx.doi.org/10.1093/nar/gkx1070</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/nar/gkx1070" target="_blank" >10.1093/nar/gkx1070</a>
Alternative languages
Result language
angličtina
Original language name
PDBe: towards reusable data delivery infrastructure at protein data bank in Europe
Original language description
The Protein Data Bank in Europe (PDBe, pdbe.org) is actively engaged in the deposition, annotation, remediation, enrichment and dissemination of macromolecular structure data. This paper describes new developments and improvements at PDBe addressing three challenging areas: data enrichment, data dissemination and functional reusability. New features of the PDBe Web site are discussed, including a context dependent menu providing links to raw experimental data and improved presentation of structures solved by hybrid methods. The paper also summarizes the features of the LiteMol suite, which is a set of services enabling fast and interactive 3D visualization of structures, with associated experimental maps, annotations and quality assessment information. We introduce a library of Web components which can be easily reused to port data and functionality available at PDBe to other services. We also introduce updates to the SIFTS resource which maps PDB data to other bioinformatics resources, and the PDBe REST API.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10608 - Biochemistry and molecular biology
Result continuities
Project
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Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2018
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Nucleic Acids Research
ISSN
0305-1048
e-ISSN
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Volume of the periodical
46
Issue of the periodical within the volume
D1
Country of publishing house
GB - UNITED KINGDOM
Number of pages
7
Pages from-to
„D486“-„D492“
UT code for WoS article
000419550700074
EID of the result in the Scopus database
2-s2.0-85040863896