Expression profiles of sRNA genes in Caldimonas thermodepolymerans
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F26%3A0199251" target="_blank" >RIV/00216305:26220/26:0199251 - isvavai.cz</a>
Result on the web
<a href="https://www.eeict.cz/eeict_download/archiv/sborniky/EEICT_2025_sbornik_2.pdf" target="_blank" >https://www.eeict.cz/eeict_download/archiv/sborniky/EEICT_2025_sbornik_2.pdf</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.13164/eeict.2025.140" target="_blank" >10.13164/eeict.2025.140</a>
Alternative languages
Result language
angličtina
Original language name
Expression profiles of sRNA genes in Caldimonas thermodepolymerans
Original language description
Regulation of gene expression represents a complex process that monitors the requirements of cells for specific gene products and adjusts their production accordingly. Each stage of gene expression employs different regulatory mechanisms. Here, we pay attention to post-transcriptional regulation by non-coding genomic elements - small RNAs (sRNAs). The aim is to address the problem of missing structural annotations of sRNA genes that play a key role in the rapid response of bacterial cells to stress conditions. For these purposes, we analyse the transcriptomic data of Caldimonas thermodepolymerans DSM 15344T, a promising adept for industrial biotechnology applications, especially for producing polyhydroxyalkanoates (PHA). Analysis of the RNA-Seq data results in a list of predicted sRNAs. Furthermore, the association of these regulatory elements with specific genes is indicated using loci information and sRNA gene co-expression analysis. Finally, sRNA expression analysis was performed to reveal the relationship of sRNA regulation to genes involved in PHA metabolism.
Czech name
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Czech description
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Classification
Type
D - Article in proceedings
CEP classification
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OECD FORD branch
10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)
Result continuities
Project
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Continuities
S - Specificky vyzkum na vysokych skolach
Others
Publication year
2025
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Article name in the collection
Proceedings II of the 31th Conference STUDENT EEICT 2025
ISBN
978-80-214-6320-2
ISSN
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e-ISSN
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Number of pages
246
Pages from-to
140-144
Publisher name
Brno University of Technology
Place of publication
Brno
Event location
Brno
Event date
Apr 29, 2025
Type of event by nationality
WRD - Celosvětová akce
UT code for WoS article
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