Evaluation of Biological Sequence Similarity Using FPGA Technology
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26230%2F10%3APU91971" target="_blank" >RIV/00216305:26230/10:PU91971 - isvavai.cz</a>
Result on the web
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DOI - Digital Object Identifier
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Alternative languages
Result language
angličtina
Original language name
Evaluation of Biological Sequence Similarity Using FPGA Technology
Original language description
Understanding structure and function of DNA sequences represents one of the most important goals in area of modern biology research. However, algorithms for DNA analysis are usually complicated by mutations caused by an evolution process, which are usually occurred in form of character insertion, deletion and substitution. With respect to these defects the time complexity of the algorithms grows and limits their practical usage. Techniques for an acceleration of the key operations using specific circuits bring a certain expectation into this area. The designed circuits are able to achieve the speedup in orders of thousands in comparison to the most powerful conventional processors. Despite of huge performance of these circuits they are not used in wide range of real word applications. The main reason lies in often variability of input tasks that leads to change of architecture sizes with respect to the target platform properties. These modifications usually require an interventio
Czech name
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Czech description
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Classification
Type
J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)
CEP classification
IN - Informatics
OECD FORD branch
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Result continuities
Project
<a href="/en/project/GA204%2F08%2F1560" target="_blank" >GA204/08/1560: In vitro and in silico identification of non-canonical DNA structures in genomic DNA sequences</a><br>
Continuities
Z - Vyzkumny zamer (s odkazem do CEZ)
Others
Publication year
2010
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Information Sciences and Technologies Bulletin of the ACM Slovakia
ISSN
1338-1237
e-ISSN
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Volume of the periodical
2
Issue of the periodical within the volume
2
Country of publishing house
SK - SLOVAKIA
Number of pages
10
Pages from-to
93-102
UT code for WoS article
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EID of the result in the Scopus database
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