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Fluorescence correlation spectroscopy diffusion laws in the presence of moving nanodomains

The result's identifiers

  • Result code in IS VaVaI

    <a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388955%3A_____%2F16%3A00457556" target="_blank" >RIV/61388955:_____/16:00457556 - isvavai.cz</a>

  • Result on the web

    <a href="http://dx.doi.org/10.1088/0022-3727/49/11/114002" target="_blank" >http://dx.doi.org/10.1088/0022-3727/49/11/114002</a>

  • DOI - Digital Object Identifier

    <a href="http://dx.doi.org/10.1088/0022-3727/49/11/114002" target="_blank" >10.1088/0022-3727/49/11/114002</a>

Alternative languages

  • Result language

    angličtina

  • Original language name

    Fluorescence correlation spectroscopy diffusion laws in the presence of moving nanodomains

  • Original language description

    It has been shown by means of simulations that spot variation fluorescence correlation/nspectroscopy (sv-FCS) can be used for the identification and, to some extent, also/ncharacterization of immobile lipid nanodomains in model as well as cellular plasma/nmembranes. However, in these simulations, the nanodomains were assumed to be stationary,/nwhereas they actually tend to move like the surrounding lipids. In the present study, we/ninvestigated how such domain movement influences the diffusion time/spot-size dependence/nobserved in FCS experiments, usually referred to as diffusion law’ analysis. We show/nthat domain movement might mask the effects of the anomalous’ diffusion characteristics/nof membrane lipids or proteins predicted for stationary domains, making it difficult to/nidentify such moving nanodomains by sv-FCS. More specifically, our simulations indicate/nthat (i) for domains moving up to a factor of 2.25 slower than the surrounding lipids, such/nimpeded diffusion cannot be observed and the diffusion behaviour of the proteins or lipids is/nindistinguishable from that of freely diffusing molecules, i.e. nanodomains are not detected;/n(ii) impeded protein/lipid diffusion behaviour can be observed in experiments where the radii/nof the detection volume are similar in size to the domain radii, the domain diffusion is about/n10 times slower than that of the lipids, and the probes show a high affinity to the domains;/nand (iii) presence of nanodomains can only be reliably detected by diffraction limited sv-FCS/nwhen the domains move very slowly (about 200 times slower than the lipid diffusion). As/nnanodomains are expected to be in the range of tens of nanometres and most probes show/nlow affinities to such domains, sv-FCS is limited to stationary domains and/or STED-FCS./nHowever, even for that latter technique, diffusing domains smaller than 50 nm in radius are/nhardly detectable by FCS diffusion time/spot-size dependencies.

  • Czech name

  • Czech description

Classification

  • Type

    J<sub>x</sub> - Unclassified - Peer-reviewed scientific article (Jimp, Jsc and Jost)

  • CEP classification

    CF - Physical chemistry and theoretical chemistry

  • OECD FORD branch

Result continuities

  • Project

    <a href="/en/project/GC14-03141J" target="_blank" >GC14-03141J: Exploring the structure function relationship of membrane-pore-forming FGF2 oligomers - a single molecule approach</a><br>

  • Continuities

    I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Others

  • Publication year

    2016

  • Confidentiality

    S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Data specific for result type

  • Name of the periodical

    Journal of Physics D-Applied Physics

  • ISSN

    0022-3727

  • e-ISSN

  • Volume of the periodical

    49

  • Issue of the periodical within the volume

    11

  • Country of publishing house

    GB - UNITED KINGDOM

  • Number of pages

    11

  • Pages from-to

  • UT code for WoS article

    000371007100003

  • EID of the result in the Scopus database

    2-s2.0-84960096929