Genome-Wide Identification and Analysis of B-Box Zinc Finger Gene Family in Sugarcane (Saccharum officinarum)

Result code in IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62156489%3A43410%2F23%3A43923545" target="_blank" >RIV/62156489:43410/23:43923545 - isvavai.cz</a>

Result on the web

<a href="https://doi.org/10.1016/j.jksus.2023.102720" target="_blank" >https://doi.org/10.1016/j.jksus.2023.102720</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/j.jksus.2023.102720" target="_blank" >10.1016/j.jksus.2023.102720</a>

Result language

angličtina

Original language name

Genome-Wide Identification and Analysis of B-Box Zinc Finger Gene Family in Sugarcane (Saccharum officinarum)

Original language description

Objective and methods: B-box-containing proteins are a kind of zinc finger (ZF) transcript protein that contains 1 otherwise 2 B-box domains even, in some cases, an additional CCT motif that is crucial for plant growth development and controlling biotic and abiotic stress. There has yet to be a comprehensive identification of the BBX genes in sugarcane by using bioinformatics tools/softwares. Results: Considered in the present research work, 21 Sugarcane genes were discovered by comprehensive bioinformatics analysis viz the phylogeny relationships, structures of genes, locations of chromosomes, gene duplication, subcellular localization, homology and codon analysis were analysed. Relying on phylogeny as well as domain constitution analysis, the identified genes must be divided into five clades. Eight out of ten Sugarcane chromosomes had an uneven distribution of Shbbxs. The significant proportion of sugarcane BBX proteins are expected to be found in nuclei and extracellular spaces. Conclusion: Our findings will serve as a foundation for subsequent functional findings of the BBX gene family, highlighting its roles in sugarcane. The findings will aid our understanding in the B-box gene family&apos;s complexity towards the abiotic stress responses, as well as provide suggestions for the imminent functional annotation of specific genes in sugarcane.

Czech name

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Czech description

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Type

J_imp - Article in a specialist periodical, which is included in the Web of Science database

CEP classification

—

OECD FORD branch

40106 - Agronomy, plant breeding and plant protection; (Agricultural biotechnology to be 4.4)

Project

—

Continuities

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Publication year

2023

Confidentiality

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Name of the periodical

Journal of King Saud University - Science

ISSN

1018-3647

e-ISSN

2213-686X

Volume of the periodical

35

Issue of the periodical within the volume

6

Country of publishing house

NL - THE KINGDOM OF THE NETHERLANDS

Number of pages

11

Pages from-to

102720

UT code for WoS article

001054054900001

EID of the result in the Scopus database

2-s2.0-85161503025