ViruSpy: a pipeline for viral identification from metagenomic samples

Kód výsledku v IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F17%3APR29099" target="_blank" >RIV/00216305:26220/17:PR29099 - isvavai.cz</a>
Výsledek na webu
<a href="https://github.com/NCBI-Hackathons/ViruSpy" target="_blank" >https://github.com/NCBI-Hackathons/ViruSpy</a>
DOI - Digital Object Identifier
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Jazyk výsledku
angličtina
Název v původním jazyce
ViruSpy: a pipeline for viral identification from metagenomic samples
Popis výsledku v původním jazyce
ViruSpy is a pipeline designed for virus discovery from metagenomic sequencing data available in NCBI’s SRA database. The first step identifies viral reads in the metagenomic sample with Magic-BLAST, which allows this step without needing to download the (often quite large) metagenomic dataset. The extracted raw reads are assembled into contigs using MEGAHIT and annotated for genes by Glimmer and for conserved domains by RPS-tBLASTn. Following annotation, the Building Up Domains (BUD) algorithm allows us to tell whether the viral genomes are non-native (i.e. integrated) to a host genome.
Název v anglickém jazyce
ViruSpy: a pipeline for viral identification from metagenomic samples
Popis výsledku anglicky
ViruSpy is a pipeline designed for virus discovery from metagenomic sequencing data available in NCBI’s SRA database. The first step identifies viral reads in the metagenomic sample with Magic-BLAST, which allows this step without needing to download the (often quite large) metagenomic dataset. The extracted raw reads are assembled into contigs using MEGAHIT and annotated for genes by Glimmer and for conserved domains by RPS-tBLASTn. Following annotation, the Building Up Domains (BUD) algorithm allows us to tell whether the viral genomes are non-native (i.e. integrated) to a host genome.

Rok uplatnění
2017
Kód důvěrnosti údajů
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

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