Variation in secondary structure of the 16S rRNA molecule in cyanobacteria with implications for phylogenetic analysis

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F14%3A00433652" target="_blank" >RIV/60077344:_____/14:00433652 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/67985939:_____/14:00434433 RIV/60076658:12310/14:43887162

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Variation in secondary structure of the 16S rRNA molecule in cyanobacteria with implications for phylogenetic analysis

Popis výsledku v původním jazyce

The analysis of the phylogenetic signal in the sequence of the 16S rRNA gene in cyanobacteria and bacteria has been primarily limited to use of unweighted primary sequence in various cladistic analyses. Such analyses ignore the significance of secondarystructure in the 16S rRNA molecule. Structure of this molecule is directly tied to its function, and consequently changes in primary sequence that lead to changes in the secondary structure theoretically have greater evolutionary significance than thosechanges that do not lead to structural changes. Very little analysis of the impact of primary sequence data on the secondary structure of the small subunit rRNA molecule in cyanobacteria has been reported. Herein is reported a secondary structure model of the full 16S rRNA sequence for Nostoc commune Vaucher ex Bornet et Flahault. We also assess the variability in secondary structure of six variable helices in 180 OTUs of cyanobacteria. Variations were minor in most instances, and the ob

Název v anglickém jazyce

Variation in secondary structure of the 16S rRNA molecule in cyanobacteria with implications for phylogenetic analysis

Popis výsledku anglicky

The analysis of the phylogenetic signal in the sequence of the 16S rRNA gene in cyanobacteria and bacteria has been primarily limited to use of unweighted primary sequence in various cladistic analyses. Such analyses ignore the significance of secondarystructure in the 16S rRNA molecule. Structure of this molecule is directly tied to its function, and consequently changes in primary sequence that lead to changes in the secondary structure theoretically have greater evolutionary significance than thosechanges that do not lead to structural changes. Very little analysis of the impact of primary sequence data on the secondary structure of the small subunit rRNA molecule in cyanobacteria has been reported. Herein is reported a secondary structure model of the full 16S rRNA sequence for Nostoc commune Vaucher ex Bornet et Flahault. We also assess the variability in secondary structure of six variable helices in 180 OTUs of cyanobacteria. Variations were minor in most instances, and the ob

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

EE - Mikrobiologie, virologie

OECD FORD obor

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Projekt

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Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2014

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Fottea

ISSN

1802-5439

e-ISSN

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Svazek periodika

14

Číslo periodika v rámci svazku

2

Stát vydavatele periodika

CZ - Česká republika

Počet stran výsledku

18

Strana od-do

161-178

Kód UT WoS článku

000345295900005

EID výsledku v databázi Scopus

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