Employing next generation sequencing to explore the repeat landscape of the plant genome

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F15%3A00456622" target="_blank" >RIV/60077344:_____/15:00456622 - isvavai.cz</a>

Výsledek na webu

—

DOI - Digital Object Identifier

—

Jazyk výsledku

angličtina

Název v původním jazyce

Employing next generation sequencing to explore the repeat landscape of the plant genome

Popis výsledku v původním jazyce

Plant genomes are dominated by repetitive DNA sequences of many distinct types which, due to their variability and high copy numbers, are difficult to analyse. This sequence complexity has recently become accessible to detailed investigations with the advent of next-generation sequencing technologies and novel analytical approaches utilizing low-pass genome sequence data. Here we explore the insights these methods have provided to our understanding of plant genomes, and review bioinformatic tools used in their analyses. We show that the repeats are diverse and fast diverging even between closely related lineages. We explore how the method has been used to study repeats in large and small plant genomes, and in association with polyploidy, distinctive chromosomes (sex chromosomes, B chromosomes, holocentric chromosomes), chromosome domains (e.g., rDNA loci and centromeres) and species groups of interest.

Název v anglickém jazyce

Employing next generation sequencing to explore the repeat landscape of the plant genome

Popis výsledku anglicky

Plant genomes are dominated by repetitive DNA sequences of many distinct types which, due to their variability and high copy numbers, are difficult to analyse. This sequence complexity has recently become accessible to detailed investigations with the advent of next-generation sequencing technologies and novel analytical approaches utilizing low-pass genome sequence data. Here we explore the insights these methods have provided to our understanding of plant genomes, and review bioinformatic tools used in their analyses. We show that the repeats are diverse and fast diverging even between closely related lineages. We explore how the method has been used to study repeats in large and small plant genomes, and in association with polyploidy, distinctive chromosomes (sex chromosomes, B chromosomes, holocentric chromosomes), chromosome domains (e.g., rDNA loci and centromeres) and species groups of interest.

Druh

O - Ostatní výsledky

CEP obor

EB - Genetika a molekulární biologie

OECD FORD obor

—

Projekt

<a href="/cs/project/GBP501%2F12%2FG090" target="_blank" >GBP501/12/G090: Evoluce a funkce komplexních genomů rostlin</a><br>

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2015

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů