A georeferenced rRNA amplicon database of aquatic microbiomes from South America.

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F22%3A00561340" target="_blank" >RIV/60077344:_____/22:00561340 - isvavai.cz</a>

Výsledek na webu

<a href="https://doi.org/10.1038/s41597-022-01665-z" target="_blank" >https://doi.org/10.1038/s41597-022-01665-z</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1038/s41597-022-01665-z" target="_blank" >10.1038/s41597-022-01665-z</a>

Jazyk výsledku

angličtina

Název v původním jazyce

A georeferenced rRNA amplicon database of aquatic microbiomes from South America.

Popis výsledku v původním jazyce

The biogeography of bacterial communities is a key topic in Microbial Ecology. Regarding continental water, most studies are carried out in the northern hemisphere, leaving a gap on microorganism's diversity patterns on a global scale. South America harbours approximately one third of the world's total freshwater resources, and is one of these understudied regions. To fill this gap, we compiled 16S rRNA amplicon sequencing data of microbial communities across South America continental water ecosystems, presenting the first database mu SudAqua[db]. The database contains over 866 georeferenced samples from 9 different ecoregions with contextual environmental information. For its integration and validation we constructed a curated database (mu SudAqua[db.sp]) using samples sequenced by Illumina MiSeq platform with commonly used prokaryote universal primers. This comprised similar to 60% of the total georeferenced samples of the mu SudAqua[db]. This compilation was carried out in the scope of the mu SudAqua collaborative network and represents one of the most complete databases of continental water microbial communities from South America.

Název v anglickém jazyce

A georeferenced rRNA amplicon database of aquatic microbiomes from South America.

Popis výsledku anglicky

The biogeography of bacterial communities is a key topic in Microbial Ecology. Regarding continental water, most studies are carried out in the northern hemisphere, leaving a gap on microorganism's diversity patterns on a global scale. South America harbours approximately one third of the world's total freshwater resources, and is one of these understudied regions. To fill this gap, we compiled 16S rRNA amplicon sequencing data of microbial communities across South America continental water ecosystems, presenting the first database mu SudAqua[db]. The database contains over 866 georeferenced samples from 9 different ecoregions with contextual environmental information. For its integration and validation we constructed a curated database (mu SudAqua[db.sp]) using samples sequenced by Illumina MiSeq platform with commonly used prokaryote universal primers. This comprised similar to 60% of the total georeferenced samples of the mu SudAqua[db]. This compilation was carried out in the scope of the mu SudAqua collaborative network and represents one of the most complete databases of continental water microbial communities from South America.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10606 - Microbiology

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2022

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Scientific Data

ISSN

2052-4463

e-ISSN

2052-4463

Svazek periodika

9

Číslo periodika v rámci svazku

1

Stát vydavatele periodika

GB - Spojené království Velké Británie a Severního Irska

Počet stran výsledku

12

Strana od-do

565

Kód UT WoS článku

000853336700003

EID výsledku v databázi Scopus

2-s2.0-85137771319