Transcriptomic analyses provide insights into plant-viroid interactions

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F23%3A00584523" target="_blank" >RIV/60077344:_____/23:00584523 - isvavai.cz</a>

Výsledek na webu

<a href="https://shop.elsevier.com/books/fundamentals-of-viroid-biology/adkar-purushothama/978-0-323-99688-4" target="_blank" >https://shop.elsevier.com/books/fundamentals-of-viroid-biology/adkar-purushothama/978-0-323-99688-4</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/B978-0-323-99688-4.00010-9" target="_blank" >10.1016/B978-0-323-99688-4.00010-9</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Transcriptomic analyses provide insights into plant-viroid interactions

Popis výsledku v původním jazyce

Plants have evolved elegant regulatory programs that can rapidly elicit the expression of defense-related genes in response to pests and pathogens, such as viroids. These defense-related genes include small RNAs, long noncoding RNAs, protein-coding mRNAs, etc. Transcriptomic analyses provide a powerful toolset to uncover those genes that have altered expression profiles in viroid-infected plants. This chapter introduces the basic concept and a brief history of transcriptomic analysis as well as its application in understanding plant-viroid interactions. This chapter intends to focus on introducing the background and methodology of transcriptomic analyses instead of providing a comprehensive literature review. While the chapter focuses on the description of the most popular RNA deep sequencing analyses, readers are referred to other resources in the Further Reading section to gain a better grasp on small RNA deep sequencing, degradome RNA deep sequencing, etc.

Název v anglickém jazyce

Transcriptomic analyses provide insights into plant-viroid interactions

Popis výsledku anglicky

Plants have evolved elegant regulatory programs that can rapidly elicit the expression of defense-related genes in response to pests and pathogens, such as viroids. These defense-related genes include small RNAs, long noncoding RNAs, protein-coding mRNAs, etc. Transcriptomic analyses provide a powerful toolset to uncover those genes that have altered expression profiles in viroid-infected plants. This chapter introduces the basic concept and a brief history of transcriptomic analysis as well as its application in understanding plant-viroid interactions. This chapter intends to focus on introducing the background and methodology of transcriptomic analyses instead of providing a comprehensive literature review. While the chapter focuses on the description of the most popular RNA deep sequencing analyses, readers are referred to other resources in the Further Reading section to gain a better grasp on small RNA deep sequencing, degradome RNA deep sequencing, etc.

Druh

C - Kapitola v odborné knize

CEP obor

—

OECD FORD obor

10607 - Virology

Projekt

<a href="/cs/project/GC18-10515J" target="_blank" >GC18-10515J: Mechanismus propagace a eliminace parazitické RNA u samčí zárodečné linie při studiu u hospodářsky významného druhu viroidu.</a><br>

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2023

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název knihy nebo sborníku

Fundamentals of Viroid Biology

ISBN

978-032399688-4

Počet stran výsledku

20

Strana od-do

255-274

Počet stran knihy

444

Název nakladatele

Elsevier

Místo vydání

London

Kód UT WoS kapitoly

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