RAPTOR: Row and position tracheid organizer in R

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41320%2F18%3A78540" target="_blank" >RIV/60460709:41320/18:78540 - isvavai.cz</a>

Výsledek na webu

<a href="http://dx.doi.org/10.1016/j.dendro.2017.10.003" target="_blank" >http://dx.doi.org/10.1016/j.dendro.2017.10.003</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/j.dendro.2017.10.003" target="_blank" >10.1016/j.dendro.2017.10.003</a>

Jazyk výsledku

angličtina

Název v původním jazyce

RAPTOR: Row and position tracheid organizer in R

Popis výsledku v původním jazyce

Mechanistic understanding of tree-ring formation and its modelling requires a cellular-based and spatially organized characterization of a tree ring, moving from whole rings, to intra-annual growth zones and individual cells. A tracheidogram is a radial profile of conifer anatomical features, such as lumen area and cell wall thickness, of sequentially- and positionally-ranked tracheids. However, its construction is tedious and time-consuming since image-analysis-based measurements do not recognize the position of cells within a radial file, and present-day tracheidograms must be constructed manually. Here we present the R-package RAPTOR that complements tracheid anatomical data obtained from quantitative wood anatomy software (e.g., ROXAS, WinCELL, ImageJ), with the specific positional information necessary for the automated construction of tracheidograms. The package includes functions to read and visualize tracheid anatomical data, and uses local search algorithms to ascribe a ranked position to

Název v anglickém jazyce

RAPTOR: Row and position tracheid organizer in R

Popis výsledku anglicky

Mechanistic understanding of tree-ring formation and its modelling requires a cellular-based and spatially organized characterization of a tree ring, moving from whole rings, to intra-annual growth zones and individual cells. A tracheidogram is a radial profile of conifer anatomical features, such as lumen area and cell wall thickness, of sequentially- and positionally-ranked tracheids. However, its construction is tedious and time-consuming since image-analysis-based measurements do not recognize the position of cells within a radial file, and present-day tracheidograms must be constructed manually. Here we present the R-package RAPTOR that complements tracheid anatomical data obtained from quantitative wood anatomy software (e.g., ROXAS, WinCELL, ImageJ), with the specific positional information necessary for the automated construction of tracheidograms. The package includes functions to read and visualize tracheid anatomical data, and uses local search algorithms to ascribe a ranked position to

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

40102 - Forestry

Projekt

—

Návaznosti

S - Specificky vyzkum na vysokych skolach

Rok uplatnění

2018

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

DENDROCHRONOLOGIA

ISSN

1125-7865

e-ISSN

—

Svazek periodika

47

Číslo periodika v rámci svazku

FEB2018

Stát vydavatele periodika

CZ - Česká republika

Počet stran výsledku

7

Strana od-do

10-16

Kód UT WoS článku

000425893400002

EID výsledku v databázi Scopus

2-s2.0-85034755541