A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60460709%3A41320%2F21%3A89528" target="_blank" >RIV/60460709:41320/21:89528 - isvavai.cz</a>

Výsledek na webu

<a href="https://www.nature.com/articles/s42003-021-02602-3" target="_blank" >https://www.nature.com/articles/s42003-021-02602-3</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1038/s42003-021-02602-3" target="_blank" >10.1038/s42003-021-02602-3</a>

Jazyk výsledku

angličtina

Název v původním jazyce

A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest

Popis výsledku v původním jazyce

Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy more than 100 million m(3) of spruce in a single year. We report a 236,8 Mb I. typographus genome assembly using PacBio long-read sequencing. The final phased assembly has a contig N-50 of 6,65 Mb in 272 contigs and is predicted to contain 23,923 protein-coding genes. We reveal expanded gene families associated with plant cell wall degradation, including pectinases, aspartyl proteases, and glycosyl hydrolases. This genome sequence from the genus Ips provides timely resources to address questions about the evolutionary biology of the true weevils (Curculionidae), one of the most species-rich animal families. In forests of today, increasingly stressed by global warming, this draft genome may assist in develo

Název v anglickém jazyce

A highly-contiguous genome assembly of the Eurasian spruce bark beetle, Ips typographus, provides insight into a major forest pest

Popis výsledku anglicky

Conifer-feeding bark beetles are important herbivores and decomposers in forest ecosystems. These species complete their life cycle in nutritionally poor substrates and some can kill enormous numbers of trees during population outbreaks. The Eurasian spruce bark beetle (Ips typographus) can destroy more than 100 million m(3) of spruce in a single year. We report a 236,8 Mb I. typographus genome assembly using PacBio long-read sequencing. The final phased assembly has a contig N-50 of 6,65 Mb in 272 contigs and is predicted to contain 23,923 protein-coding genes. We reveal expanded gene families associated with plant cell wall degradation, including pectinases, aspartyl proteases, and glycosyl hydrolases. This genome sequence from the genus Ips provides timely resources to address questions about the evolutionary biology of the true weevils (Curculionidae), one of the most species-rich animal families. In forests of today, increasingly stressed by global warming, this draft genome may assist in develo

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

40102 - Forestry

Projekt

—

Návaznosti

S - Specificky vyzkum na vysokych skolach

Rok uplatnění

2021

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

COMMUNICATIONS BIOLOGY

ISSN

2399-3642

e-ISSN

—

Svazek periodika

4

Číslo periodika v rámci svazku

1

Stát vydavatele periodika

DE - Spolková republika Německo

Počet stran výsledku

9

Strana od-do

1-9

Kód UT WoS článku

000694882700010

EID výsledku v databázi Scopus

2-s2.0-85114686473