Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F21%3A00546767" target="_blank" >RIV/61388971:_____/21:00546767 - isvavai.cz</a>

Výsledek na webu

<a href="https://www.nature.com/articles/s41597-021-00987-8" target="_blank" >https://www.nature.com/articles/s41597-021-00987-8</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1038/s41597-021-00987-8" target="_blank" >10.1038/s41597-021-00987-8</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood

Popis výsledku v původním jazyce

Deadwood represents significant carbon (C) stock in a temperate forests. Its decomposition and C mobilization is accomplished by decomposer microorganisms fungi and bacteria who also supply the foodweb of commensalist microbes. Due to the ecosystem-level importance of deadwood habitat as a C and nutrient stock with significant nitrogen fixation, the deadwood microbiome composition and function are critical to understanding the microbial processes related to its decomposition. We present a comprehensive suite of data packages obtained through environmental DNA and RNA sequencing from natural deadwood. Data provide a complex picture of the composition and function of microbiome on decomposing trunks of European beech (Fagus sylvatica L.) in a natural forest. Packages include deadwood metagenomes, metatranscriptomes, sequences of total RNA, bacterial genomes resolved from metagenomic data and the 16S rRNA gene and ITS2 metabarcoding markers to characterize the bacterial and fungal communities. This project will be of use to microbiologists, environmental biologists and biogeochemists interested in the microbial processes associated with the transformation of recalcitrant plant biomass.

Název v anglickém jazyce

Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood

Popis výsledku anglicky

Deadwood represents significant carbon (C) stock in a temperate forests. Its decomposition and C mobilization is accomplished by decomposer microorganisms fungi and bacteria who also supply the foodweb of commensalist microbes. Due to the ecosystem-level importance of deadwood habitat as a C and nutrient stock with significant nitrogen fixation, the deadwood microbiome composition and function are critical to understanding the microbial processes related to its decomposition. We present a comprehensive suite of data packages obtained through environmental DNA and RNA sequencing from natural deadwood. Data provide a complex picture of the composition and function of microbiome on decomposing trunks of European beech (Fagus sylvatica L.) in a natural forest. Packages include deadwood metagenomes, metatranscriptomes, sequences of total RNA, bacterial genomes resolved from metagenomic data and the 16S rRNA gene and ITS2 metabarcoding markers to characterize the bacterial and fungal communities. This project will be of use to microbiologists, environmental biologists and biogeochemists interested in the microbial processes associated with the transformation of recalcitrant plant biomass.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10606 - Microbiology

Projekt

<a href="/cs/project/GC21-09334J" target="_blank" >GC21-09334J: Vliv mikroklimatu na rozklad mrtvého dřeva, mikrobiální diversitu a adaptační mechanismy s ohledem na důležité procesy lesního ekosystému</a><br>

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2021

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Scientific Data

ISSN

2052-4463

e-ISSN

2052-4463

Svazek periodika

8

Číslo periodika v rámci svazku

1

Stát vydavatele periodika

DE - Spolková republika Německo

Počet stran výsledku

7

Strana od-do

198

Kód UT WoS článku

000684260200001

EID výsledku v databázi Scopus

2-s2.0-85111986556