Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F11%3A00365378" target="_blank" >RIV/61389030:_____/11:00365378 - isvavai.cz</a>

Výsledek na webu

<a href="http://dx.doi.org/10.1111/j.1467-7652.2010.00587.x" target="_blank" >http://dx.doi.org/10.1111/j.1467-7652.2010.00587.x</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1111/j.1467-7652.2010.00587.x" target="_blank" >10.1111/j.1467-7652.2010.00587.x</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS

Popis výsledku v původním jazyce

The genome of bread wheat (Triticum aestivum) is predicted to be greater than 16 Gbp in size and consist predominantly of repetitive elements, making the sequencing and assembly of this genome a major challenge. We have reduced genome sequence complexityby isolating chromosome arm 7DS and applied second-generation technology and appropriate algorithmic analysis to sequence and assemble low copy and genic regions of this chromosome arm. The assembly represents approximately 40% of the chromosome arm andall known 7DS genes. Comparison of the 7DS assembly with the sequenced genomes of rice (Oryza sativa) and Brachypodium distachyon identified large regions of conservation. The syntenic relationship between wheat, B. distachyon and O. sativa, along withavailable genetic mapping data, has been used to produce an annotated draft 7DS syntenic build, which is publicly available at http://www.wheatgenome.info.

Název v anglickém jazyce

Sequencing and assembly of low copy and genic regions of isolated Triticum aestivum chromosome arm 7DS

Popis výsledku anglicky

The genome of bread wheat (Triticum aestivum) is predicted to be greater than 16 Gbp in size and consist predominantly of repetitive elements, making the sequencing and assembly of this genome a major challenge. We have reduced genome sequence complexityby isolating chromosome arm 7DS and applied second-generation technology and appropriate algorithmic analysis to sequence and assemble low copy and genic regions of this chromosome arm. The assembly represents approximately 40% of the chromosome arm andall known 7DS genes. Comparison of the 7DS assembly with the sequenced genomes of rice (Oryza sativa) and Brachypodium distachyon identified large regions of conservation. The syntenic relationship between wheat, B. distachyon and O. sativa, along withavailable genetic mapping data, has been used to produce an annotated draft 7DS syntenic build, which is publicly available at http://www.wheatgenome.info.

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

EB - Genetika a molekulární biologie

OECD FORD obor

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Projekt

Výsledek vznikl pri realizaci vícero projektů. Více informací v záložce Projekty.

Návaznosti

Z - Vyzkumny zamer (s odkazem do CEZ)

Rok uplatnění

2011

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Plant Biotechnology Journal

ISSN

1467-7644

e-ISSN

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Svazek periodika

9

Číslo periodika v rámci svazku

7

Stát vydavatele periodika

US - Spojené státy americké

Počet stran výsledku

8

Strana od-do

768-775

Kód UT WoS článku

000293659700006

EID výsledku v databázi Scopus

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