Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F13%3A00393905" target="_blank" >RIV/61389030:_____/13:00393905 - isvavai.cz</a>

Výsledek na webu

<a href="http://dx.doi.org/10.1111/pbi.12003" target="_blank" >http://dx.doi.org/10.1111/pbi.12003</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1111/pbi.12003" target="_blank" >10.1111/pbi.12003</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

Popis výsledku v původním jazyce

Agronomically important traits are frequently controlled by rare, genotype-specific alleles. Such genes can only be mapped in a population derived from the donor genotype. This requires the development of a specific genetic map, which is difficult in wheat because of the low level of polymorphism among elite cultivars. The absence of sufficient polymorphism, the complexity of the hexaploid wheat genome as well as the lack of complete sequence information make the construction of genetic maps with a highdensity of reproducible and polymorphic markers challenging. We developed a genotype-specific genetic map of chromosome 3B from winter wheat cultivars Arina and Forno. Chromosome 3B was isolated from the two cultivars and then sequenced to 10-fold coverage. This resulted in a single-nucleotide polymorphisms (SNP) database of the complete chromosome. Based on proposed synteny with the Brachypodium model genome and gene annotation, sequences close to coding regions were used for the devel

Název v anglickém jazyce

Genotype-specific SNP map based on whole chromosome 3B sequence information from wheat cultivars Arina and Forno

Popis výsledku anglicky

Agronomically important traits are frequently controlled by rare, genotype-specific alleles. Such genes can only be mapped in a population derived from the donor genotype. This requires the development of a specific genetic map, which is difficult in wheat because of the low level of polymorphism among elite cultivars. The absence of sufficient polymorphism, the complexity of the hexaploid wheat genome as well as the lack of complete sequence information make the construction of genetic maps with a highdensity of reproducible and polymorphic markers challenging. We developed a genotype-specific genetic map of chromosome 3B from winter wheat cultivars Arina and Forno. Chromosome 3B was isolated from the two cultivars and then sequenced to 10-fold coverage. This resulted in a single-nucleotide polymorphisms (SNP) database of the complete chromosome. Based on proposed synteny with the Brachypodium model genome and gene annotation, sequences close to coding regions were used for the devel

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

EB - Genetika a molekulární biologie

OECD FORD obor

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Projekt

—

Návaznosti

Z - Vyzkumny zamer (s odkazem do CEZ)

Rok uplatnění

2013

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Plant Biotechnology Journal

ISSN

1467-7644

e-ISSN

—

Svazek periodika

11

Číslo periodika v rámci svazku

1

Stát vydavatele periodika

US - Spojené státy americké

Počet stran výsledku

10

Strana od-do

23-32

Kód UT WoS článku

000312887700003

EID výsledku v databázi Scopus

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