Building the Coleoptera tree-of-life for } 8000 species: composition of public DNA data and fit with Linnaean classification

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61989592%3A15310%2F14%3A33152041" target="_blank" >RIV/61989592:15310/14:33152041 - isvavai.cz</a>

Výsledek na webu

<a href="http://onlinelibrary.wiley.com/doi/10.1111/syen.12037/epdf" target="_blank" >http://onlinelibrary.wiley.com/doi/10.1111/syen.12037/epdf</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1111/syen.12037" target="_blank" >10.1111/syen.12037</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Building the Coleoptera tree-of-life for } 8000 species: composition of public DNA data and fit with Linnaean classification

Popis výsledku v původním jazyce

The species representation of public databases is growing rapidly and permits increasingly detailed phylogenetic inferences. We present a supermatrix based on all gene sequences of Coleoptera available in Genbank for two nuclear (18S and 28S rRNA) and two mitochondrial (rrnL and cox1) genes. After filtering for unique species names and the addition of 2000 unpublished sequences for cox1 and 18S rRNA, the resulting data matrix included 8441 species-level terminals and 6600 aligned nucleotide positions. The concatenated matrix represents the equivalent of 2.17% of the 390000 described species of Coleoptera and includes 152 beetle families. The remaining 29 families constitute small lineages with 250 known species in total. Taxonomic coverage remains lowfor several major lineages, including Buprestidae (0.16% of described species), Staphylinidae (1.03%), Tenebrionidae (0.90%) and Cerambycidae (0.58%). The current taxon sampling was strongly biased towards the Northern Hemisphere. Phyloge

Název v anglickém jazyce

Building the Coleoptera tree-of-life for } 8000 species: composition of public DNA data and fit with Linnaean classification

Popis výsledku anglicky

The species representation of public databases is growing rapidly and permits increasingly detailed phylogenetic inferences. We present a supermatrix based on all gene sequences of Coleoptera available in Genbank for two nuclear (18S and 28S rRNA) and two mitochondrial (rrnL and cox1) genes. After filtering for unique species names and the addition of 2000 unpublished sequences for cox1 and 18S rRNA, the resulting data matrix included 8441 species-level terminals and 6600 aligned nucleotide positions. The concatenated matrix represents the equivalent of 2.17% of the 390000 described species of Coleoptera and includes 152 beetle families. The remaining 29 families constitute small lineages with 250 known species in total. Taxonomic coverage remains lowfor several major lineages, including Buprestidae (0.16% of described species), Staphylinidae (1.03%), Tenebrionidae (0.90%) and Cerambycidae (0.58%). The current taxon sampling was strongly biased towards the Northern Hemisphere. Phyloge

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

EG - Zoologie

OECD FORD obor

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Projekt

<a href="/cs/project/GAP506%2F11%2F1757" target="_blank" >GAP506/11/1757: Phylogeny of Metriorrhynchini: history of dispersal, radiations and mass extinctions.</a><br>

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2014

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Systematic Entomology

ISSN

0307-6970

e-ISSN

—

Svazek periodika

39

Číslo periodika v rámci svazku

1

Stát vydavatele periodika

GB - Spojené království Velké Británie a Severního Irska

Počet stran výsledku

14

Strana od-do

97-110

Kód UT WoS článku

000329322900008

EID výsledku v databázi Scopus

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