2DProts: database of family-wide protein secondary structure diagrams

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61989592%3A15310%2F21%3A73609294" target="_blank" >RIV/61989592:15310/21:73609294 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/00216224:14740/21:00122676

Výsledek na webu

<a href="https://academic.oup.com/bioinformatics/article/37/23/4599/6318387" target="_blank" >https://academic.oup.com/bioinformatics/article/37/23/4599/6318387</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1093/bioinformatics/btab505" target="_blank" >10.1093/bioinformatics/btab505</a>

Jazyk výsledku

angličtina

Název v původním jazyce

2DProts: database of family-wide protein secondary structure diagrams

Popis výsledku v původním jazyce

A Summary: Secondary structures provide a deep insight into the protein architecture. They can serve for comparison between individual protein family members. The most straightforward way how to deal with protein secondary structure is its visualization using 2D diagrams. Several software tools for the generation of 2D diagrams were developed. Unfortunately, they create 2D diagrams based on only a single protein. Therefore, 2D diagrams of two proteins from one family markedly differ. For this reason, we developed the 2DProts database, which contains secondary structure 2D diagrams for all domains from the CATH and all proteins from PDB databases. These 2D diagrams are generated based on a whole protein family, and they also consider information about the 3D arrangement of secondary structure elements. Moreover, 2DProts database contains multiple 2D diagrams, which provide an overview of a whole protein family&apos;s secondary structures. 2DProts is updated weekly and is integrated into CATH.

Název v anglickém jazyce

2DProts: database of family-wide protein secondary structure diagrams

Popis výsledku anglicky

A Summary: Secondary structures provide a deep insight into the protein architecture. They can serve for comparison between individual protein family members. The most straightforward way how to deal with protein secondary structure is its visualization using 2D diagrams. Several software tools for the generation of 2D diagrams were developed. Unfortunately, they create 2D diagrams based on only a single protein. Therefore, 2D diagrams of two proteins from one family markedly differ. For this reason, we developed the 2DProts database, which contains secondary structure 2D diagrams for all domains from the CATH and all proteins from PDB databases. These 2D diagrams are generated based on a whole protein family, and they also consider information about the 3D arrangement of secondary structure elements. Moreover, 2DProts database contains multiple 2D diagrams, which provide an overview of a whole protein family&apos;s secondary structures. 2DProts is updated weekly and is integrated into CATH.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10403 - Physical chemistry

Projekt

Výsledek vznikl pri realizaci vícero projektů. Více informací v záložce Projekty.

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2021

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

BIOINFORMATICS

ISSN

1367-4803

e-ISSN

—

Svazek periodika

37

Číslo periodika v rámci svazku

23

Stát vydavatele periodika

GB - Spojené království Velké Británie a Severního Irska

Počet stran výsledku

3

Strana od-do

4599-4601

Kód UT WoS článku

000733374500050

EID výsledku v databázi Scopus

2-s2.0-85122184651