Detection of clinically important beta-lactamases by using PCR

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62157124%3A16810%2F21%3A43879646" target="_blank" >RIV/62157124:16810/21:43879646 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/62157124:16270/21:43879646

Výsledek na webu

<a href="https://academic.oup.com/femsle/article-abstract/368/11/fnab068/6294906?redirectedFrom=fulltext" target="_blank" >https://academic.oup.com/femsle/article-abstract/368/11/fnab068/6294906?redirectedFrom=fulltext</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1093/femsle/fnab068" target="_blank" >10.1093/femsle/fnab068</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Detection of clinically important beta-lactamases by using PCR

Popis výsledku v původním jazyce

Increasing antimicrobial resistance of nosocomial pathogens is becoming a serious threat to public health. To control the spread of this resistance, it is necessary to detect beta-lactamase-producing organisms in the clinical setting. The aims of the study were to design a PCR assay for rapid detection of clinically encountered beta-lactamase genes described in Enterobacteriaceae and Gram-negative non-fermenting bacteria. The functionality of proposed primers was verified using eight reference strains and 17 strains from our collection, which contained 29 different beta-lactamase genes. PCR products of the test strains were confirmed by Sanger sequencing. Sequence analysis was performed using bioinformatics software Geneious. Overall, 67 pairs of primers for detecting 12 members of the class C beta-lactamase family, 15 members of class A beta-lactamases, six gene families of subclass B1, one member each of subclasses B2, B3 and class D beta-lactamases were designed, of which 43 pairs were experimentally tested in vitro. All 29 beta-lactamase genes, including 10 oxacillinase subgroups, were correctly identified by PCR. The proposed set of primers should be able to specifically detect 99.7% of analyzed beta-lactamase subtypes and more than 79.8% of all described beta-lactamase genes.

Název v anglickém jazyce

Detection of clinically important beta-lactamases by using PCR

Popis výsledku anglicky

Increasing antimicrobial resistance of nosocomial pathogens is becoming a serious threat to public health. To control the spread of this resistance, it is necessary to detect beta-lactamase-producing organisms in the clinical setting. The aims of the study were to design a PCR assay for rapid detection of clinically encountered beta-lactamase genes described in Enterobacteriaceae and Gram-negative non-fermenting bacteria. The functionality of proposed primers was verified using eight reference strains and 17 strains from our collection, which contained 29 different beta-lactamase genes. PCR products of the test strains were confirmed by Sanger sequencing. Sequence analysis was performed using bioinformatics software Geneious. Overall, 67 pairs of primers for detecting 12 members of the class C beta-lactamase family, 15 members of class A beta-lactamases, six gene families of subclass B1, one member each of subclasses B2, B3 and class D beta-lactamases were designed, of which 43 pairs were experimentally tested in vitro. All 29 beta-lactamase genes, including 10 oxacillinase subgroups, were correctly identified by PCR. The proposed set of primers should be able to specifically detect 99.7% of analyzed beta-lactamase subtypes and more than 79.8% of all described beta-lactamase genes.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10606 - Microbiology

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2021

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Fems microbiology letters

ISSN

0378-1097

e-ISSN

—

Svazek periodika

368

Číslo periodika v rámci svazku

11

Stát vydavatele periodika

GB - Spojené království Velké Británie a Severního Irska

Počet stran výsledku

11

Strana od-do

—

Kód UT WoS článku

000670887100004

EID výsledku v databázi Scopus

2-s2.0-85108386470