Scaling and Integration of Kinetic Models of Photosynthesis.Towards Comprehensive E-Photosynthesis

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67179843%3A_____%2F09%3A00359469" target="_blank" >RIV/67179843:_____/09:00359469 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/67179843:_____/09:00375900

Výsledek na webu

<a href="http://dx.doi.org/10.1007/978-1-4020-9237-4" target="_blank" >http://dx.doi.org/10.1007/978-1-4020-9237-4</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1007/978-1-4020-9237-4" target="_blank" >10.1007/978-1-4020-9237-4</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Scaling and Integration of Kinetic Models of Photosynthesis.Towards Comprehensive E-Photosynthesis

Popis výsledku v původním jazyce

Photosynthesis as it occurs in a natural environment reflects not only the primary biophysical and biochemical reactions but also a network of regulatory interactions that act across timescales and spatial boundaries. Modeling such a tightly regulated biosystem is feasible when the model is reduced to describe only a rather particular experimental situation such as fluorescence response to a single turnover light flash or the dynamics around the steady-state of CB cycle. In this chapter we propose the Comprehensive Modeling Space (CMS) where the partial photosynthesis models would be shared by means of SBML language, which is the de-facto standard for the formal representation of biochemical models. Models validity is defined by an extension of MIRIAMstandard. The hierarchy and connectivity of the partial models within the CMS is determined by rigorous dimensionality reduction techniques. We exemplify the principles of the comprehensive modeling approach based on partial models of the

Název v anglickém jazyce

Scaling and Integration of Kinetic Models of Photosynthesis.Towards Comprehensive E-Photosynthesis

Popis výsledku anglicky

Photosynthesis as it occurs in a natural environment reflects not only the primary biophysical and biochemical reactions but also a network of regulatory interactions that act across timescales and spatial boundaries. Modeling such a tightly regulated biosystem is feasible when the model is reduced to describe only a rather particular experimental situation such as fluorescence response to a single turnover light flash or the dynamics around the steady-state of CB cycle. In this chapter we propose the Comprehensive Modeling Space (CMS) where the partial photosynthesis models would be shared by means of SBML language, which is the de-facto standard for the formal representation of biochemical models. Models validity is defined by an extension of MIRIAMstandard. The hierarchy and connectivity of the partial models within the CMS is determined by rigorous dimensionality reduction techniques. We exemplify the principles of the comprehensive modeling approach based on partial models of the

Druh

C - Kapitola v odborné knize

CEP obor

EF - Botanika

OECD FORD obor

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Projekt

—

Návaznosti

Z - Vyzkumny zamer (s odkazem do CEZ)

Rok uplatnění

2009

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název knihy nebo sborníku

Photosynthesis in silico: Understanding Complexity from Molecules to Ecosystems

ISBN

978-1-4020-9236-7

Počet stran výsledku

13

Strana od-do

17-28

Počet stran knihy

508

Název nakladatele

Springer

Místo vydání

Dordrecht

Kód UT WoS kapitoly

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