Simple Tool for Semi-automated Evaluation of Yeast Colony Images

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985556%3A_____%2F13%3A00381971" target="_blank" >RIV/67985556:_____/13:00381971 - isvavai.cz</a>

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Simple Tool for Semi-automated Evaluation of Yeast Colony Images

Popis výsledku v původním jazyce

A tool for semi-automated evaluation of images of yeast colonies is presented in the paper. The input data for the tool is a batch of Petri dish images, possibly in nested directories, the output is written to a text file in a simple CSV (comma-separatedvalues) format. The tool is designed to evaluate, for each dish image, the relative coverage of the dish and the number of colonies contained in the dish. It is intended for use in a research laboratory, where a general-purpose imaging setup is used totake the images, which are then processed off-line. In the paper, the characteristic features of the yeast colony images are described and the processing flow and the user interface of the tool are reviewed. The performance of the counting is evaluated using a test set of 245 images with typical relative coverage of less than 10%.

Název v anglickém jazyce

Simple Tool for Semi-automated Evaluation of Yeast Colony Images

Popis výsledku anglicky

A tool for semi-automated evaluation of images of yeast colonies is presented in the paper. The input data for the tool is a batch of Petri dish images, possibly in nested directories, the output is written to a text file in a simple CSV (comma-separatedvalues) format. The tool is designed to evaluate, for each dish image, the relative coverage of the dish and the number of colonies contained in the dish. It is intended for use in a research laboratory, where a general-purpose imaging setup is used totake the images, which are then processed off-line. In the paper, the characteristic features of the yeast colony images are described and the processing flow and the user interface of the tool are reviewed. The performance of the counting is evaluated using a test set of 245 images with typical relative coverage of less than 10%.

Druh

C - Kapitola v odborné knize

CEP obor

JC - Počítačový hardware a software

OECD FORD obor

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Projekt

<a href="/cs/project/TA01010931" target="_blank" >TA01010931: Systém pro podporu vyhodnocování metody FISH</a><br>

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2013

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název knihy nebo sborníku

Biomedical Engineering Systems and Technologies, 4th International Joint Conference, BIOSTEC 2011, Revised Selected Papers

ISBN

978-3-642-29751-9

Počet stran výsledku

16

Strana od-do

110-125

Počet stran knihy

410

Název nakladatele

Springer

Místo vydání

Berlin

Kód UT WoS kapitoly

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