Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985904%3A_____%2F14%3A00432592" target="_blank" >RIV/67985904:_____/14:00432592 - isvavai.cz</a>

Výsledek na webu

<a href="http://dx.doi.org/10.1093/database/bau061" target="_blank" >http://dx.doi.org/10.1093/database/bau061</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1093/database/bau061" target="_blank" >10.1093/database/bau061</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Popis výsledku v původním jazyce

DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating aset of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence s

Název v anglickém jazyce

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

Popis výsledku anglicky

DNA phylogenetic comparisons have shown that morphology-based species recognition often underestimates fungal diversity. Therefore, the need for accurate DNA sequence data, tied to both correct taxonomic names and clearly annotated specimen data, has never been greater. Furthermore, the growing number of molecular ecology and microbiome projects using high-throughput sequencing require fast and effective methods for en masse species assignments. In this article, we focus on selecting and re-annotating aset of marker reference sequences that represent each currently accepted order of Fungi. The particular focus is on sequences from the internal transcribed spacer region in the nuclear ribosomal cistron, derived from type specimens and/or ex-type cultures. Re-annotated and verified sequences were deposited in a curated public database at the National Center for Biotechnology Information (NCBI), namely the RefSeq Targeted Loci (RTL) database, and will be visible during routine sequence s

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

EE - Mikrobiologie, virologie

OECD FORD obor

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Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2014

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Database

ISSN

1758-0463

e-ISSN

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Svazek periodika

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Číslo periodika v rámci svazku

bau061

Stát vydavatele periodika

GB - Spojené království Velké Británie a Severního Irska

Počet stran výsledku

21

Strana od-do

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Kód UT WoS článku

000338579600001

EID výsledku v databázi Scopus

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