Strain "Acinetobacter mesopotamicus" GC2 does not represent a novel species, but belongs to the species Acinetobacter lwoffii as revealed by whole-genome sequence-based analysis
Identifikátory výsledku
Kód výsledku v IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F75010330%3A_____%2F21%3A00013480" target="_blank" >RIV/75010330:_____/21:00013480 - isvavai.cz</a>
Nalezeny alternativní kódy
RIV/00216208:11130/21:10416972
Výsledek na webu
<a href="https://link.springer.com/article/10.1007/s00284-020-02275-x" target="_blank" >https://link.springer.com/article/10.1007/s00284-020-02275-x</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1007/s00284-020-02275-x" target="_blank" >10.1007/s00284-020-02275-x</a>
Alternativní jazyky
Jazyk výsledku
angličtina
Název v původním jazyce
Strain "Acinetobacter mesopotamicus" GC2 does not represent a novel species, but belongs to the species Acinetobacter lwoffii as revealed by whole-genome sequence-based analysis
Popis výsledku v původním jazyce
The formal scientific name "Acinetobacter mesopotamicus" has recently been proposed for bacterial strain GC2 isolated from soil (Curr Microbiol 77:3192-3200). However, the recalculation of the average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) parameters revealed that their values for the genome sequences of GC2 and Acinetobacter lwoffii NCTC 5866(T) were as high as 95.7% and 66.1%, respectively. Moreover, the ANI and dDDH values for the genome of GC2 tested against those of 10 reference strains of A. lwoffii were 95.5-96.7% and 65.5-74.2%, respectively, and fall within the intraspecies range of these values known for A. lwoffii. These data indicate that strain GC2 belongs to A. lwoffii and contradicts the results of the authors of the proposal, who found the ANI and dDDH values for the GC2 and A. lwoffii DSM 2403(T) genomes to be 88.87% and 36.1%, respectively. The misclassification of strain GC2 is likely to result from the use of an incorrect reference genome sequence for in silico comparative analyses.
Název v anglickém jazyce
Strain "Acinetobacter mesopotamicus" GC2 does not represent a novel species, but belongs to the species Acinetobacter lwoffii as revealed by whole-genome sequence-based analysis
Popis výsledku anglicky
The formal scientific name "Acinetobacter mesopotamicus" has recently been proposed for bacterial strain GC2 isolated from soil (Curr Microbiol 77:3192-3200). However, the recalculation of the average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) parameters revealed that their values for the genome sequences of GC2 and Acinetobacter lwoffii NCTC 5866(T) were as high as 95.7% and 66.1%, respectively. Moreover, the ANI and dDDH values for the genome of GC2 tested against those of 10 reference strains of A. lwoffii were 95.5-96.7% and 65.5-74.2%, respectively, and fall within the intraspecies range of these values known for A. lwoffii. These data indicate that strain GC2 belongs to A. lwoffii and contradicts the results of the authors of the proposal, who found the ANI and dDDH values for the GC2 and A. lwoffii DSM 2403(T) genomes to be 88.87% and 36.1%, respectively. The misclassification of strain GC2 is likely to result from the use of an incorrect reference genome sequence for in silico comparative analyses.
Klasifikace
Druh
J<sub>imp</sub> - Článek v periodiku v databázi Web of Science
CEP obor
—
OECD FORD obor
30303 - Infectious Diseases
Návaznosti výsledku
Projekt
—
Návaznosti
V - Vyzkumna aktivita podporovana z jinych verejnych zdroju
Ostatní
Rok uplatnění
2021
Kód důvěrnosti údajů
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Údaje specifické pro druh výsledku
Název periodika
Current Microbiology
ISSN
0343-8651
e-ISSN
1432-0991
Svazek periodika
78
Číslo periodika v rámci svazku
1
Stát vydavatele periodika
US - Spojené státy americké
Počet stran výsledku
2
Strana od-do
369-370
Kód UT WoS článku
000585984000001
EID výsledku v databázi Scopus
2-s2.0-85094947274