pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm
The result's identifiers
Result code in IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081707%3A_____%2F20%3A00539922" target="_blank" >RIV/68081707:_____/20:00539922 - isvavai.cz</a>
Alternative codes found
RIV/00216224:14330/20:00114129 RIV/00216305:26230/20:PU135505
Result on the web
<a href="https://academic.oup.com/bioinformatics/article-abstract/36/8/2584/5674042?redirectedFrom=fulltext" target="_blank" >https://academic.oup.com/bioinformatics/article-abstract/36/8/2584/5674042?redirectedFrom=fulltext</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1093/bioinformatics/btz928" target="_blank" >10.1093/bioinformatics/btz928</a>
Alternative languages
Result language
angličtina
Original language name
pqsfinder web: G-quadruplex prediction using optimized pqsfinder algorithm
Original language description
Motivation: G-quadruplex is a DNA or RNA form in which four guanine-rich regions are held together by base pairing between guanine nucleotides in coordination with potassium ions. G-quadruplexes are increasingly seen as a biologically important component of genomes. Their detection in vivo is problematic, however, sequencing and spectrometric techniques exist for their in vitro detection. We previously devised the pqsfinder algorithm for PQS identification, implemented it in C++ and published as an R/Bioconductor package. We looked for ways to optimize pqsfinder for faster and user-friendly sequence analysis.
Czech name
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Czech description
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Classification
Type
J<sub>imp</sub> - Article in a specialist periodical, which is included in the Web of Science database
CEP classification
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OECD FORD branch
10609 - Biochemical research methods
Result continuities
Project
<a href="/en/project/GA18-00258S" target="_blank" >GA18-00258S: The role of transposable elements in the dynamics of plant genomes</a><br>
Continuities
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Others
Publication year
2020
Confidentiality
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Data specific for result type
Name of the periodical
Bioinformatics
ISSN
1367-4803
e-ISSN
—
Volume of the periodical
36
Issue of the periodical within the volume
8
Country of publishing house
GB - UNITED KINGDOM
Number of pages
3
Pages from-to
2584-2586
UT code for WoS article
000537473400037
EID of the result in the Scopus database
2-s2.0-85084028047