Streamlining Neuroimaging - Snakemake's Role in Developing a Striatal Segmentation Pipeline

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00064165%3A_____%2F24%3A10488856" target="_blank" >RIV/00064165:_____/24:10488856 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/68407700:21460/24:00376097 RIV/00216208:11110/24:10488856

Výsledek na webu

<a href="https://doi.org/10.1007/978-3-031-62520-6_68" target="_blank" >https://doi.org/10.1007/978-3-031-62520-6_68</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1007/978-3-031-62520-6_68" target="_blank" >10.1007/978-3-031-62520-6_68</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Streamlining Neuroimaging - Snakemake's Role in Developing a Striatal Segmentation Pipeline

Popis výsledku v původním jazyce

The striatum, a component of the basal ganglia, has been extensively investigated in human and animal models due to its links to neurodegenerative diseases. One of the overarching goals of these studies is to identify biomarkers that can facilitate early detection during the prodromal or initial manifestation stages of these diseases. Various methods of diffusion magnetic resonance (dMRI) analysis are a promising avenue in human studies. A recent innovation provides a novel method of parceling the human striatum into distinct compartments with connectivity specific for the striosomes and matrix. This method involves numerous processing steps and requires significant computational resources. Integration of a scientific workflow is recommended to simplify deployment, ensure scalability and reliability, and facilitate the addition and parameterization of processes. This can potentially improve the efficiency of future research in this domain. In this study, we introduce a pipeline capable of segmenting striosome-like and matrix-like voxels in the human striatum using dMRI images, leveraging the scientific workflow tool, Snakemake.

Název v anglickém jazyce

Streamlining Neuroimaging - Snakemake's Role in Developing a Striatal Segmentation Pipeline

Popis výsledku anglicky

The striatum, a component of the basal ganglia, has been extensively investigated in human and animal models due to its links to neurodegenerative diseases. One of the overarching goals of these studies is to identify biomarkers that can facilitate early detection during the prodromal or initial manifestation stages of these diseases. Various methods of diffusion magnetic resonance (dMRI) analysis are a promising avenue in human studies. A recent innovation provides a novel method of parceling the human striatum into distinct compartments with connectivity specific for the striosomes and matrix. This method involves numerous processing steps and requires significant computational resources. Integration of a scientific workflow is recommended to simplify deployment, ensure scalability and reliability, and facilitate the addition and parameterization of processes. This can potentially improve the efficiency of future research in this domain. In this study, we introduce a pipeline capable of segmenting striosome-like and matrix-like voxels in the human striatum using dMRI images, leveraging the scientific workflow tool, Snakemake.

Druh

D - Stať ve sborníku

CEP obor

—

OECD FORD obor

30103 - Neurosciences (including psychophysiology)

Projekt

—

Návaznosti

V - Vyzkumna aktivita podporovana z jinych verejnych zdroju

Rok uplatnění

2024

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název statě ve sborníku

Advances in Digital Health and Medical Bioengineering. EHB 2023. IFMBE Proceedings

ISBN

978-3-031-62519-0

ISSN

1680-0737

e-ISSN

—

Počet stran výsledku

8

Strana od-do

610-617

Název nakladatele

Springer

Místo vydání

Cham

Místo konání akce

Bucharest

Datum konání akce

9. 11. 2023

Typ akce podle státní příslušnosti

WRD - Celosvětová akce

Kód UT WoS článku

001326809000068