CytoPacq: A web-based toolbox for simulation of 3D cell imaging and quality control of related image analysis

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14330%2F10%3A00044041" target="_blank" >RIV/00216224:14330/10:00044041 - isvavai.cz</a>

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

CytoPacq: A web-based toolbox for simulation of 3D cell imaging and quality control of related image analysis

Popis výsledku v původním jazyce

Fluorescence microscopy still faces the problem of the quality of cell image analysis results. Degradations caused by cell preparation, optics and electronics considerably affect most 2D and 3D cell image data acquired using optical microscopy. That is why image processing algorithms applied to these data typically offer imprecise and unreliable results. As the ground truth for given image data is not available in most experiments, the outputs of different image analysis methods can be neither verifiednor compared to each other. Some papers solve this problem partially with estimates of ground truth by experts in the field (biologists or physicians). However, in many cases, such a ground truth estimate is very subjective and strongly varies between different experts. In order to overcome these difficulties, we have created a toolbox [1] that can generate 3D digital phantoms of specific cellular components along with their corresponding images degraded by specific optics and electronic

Název v anglickém jazyce

CytoPacq: A web-based toolbox for simulation of 3D cell imaging and quality control of related image analysis

Popis výsledku anglicky

Fluorescence microscopy still faces the problem of the quality of cell image analysis results. Degradations caused by cell preparation, optics and electronics considerably affect most 2D and 3D cell image data acquired using optical microscopy. That is why image processing algorithms applied to these data typically offer imprecise and unreliable results. As the ground truth for given image data is not available in most experiments, the outputs of different image analysis methods can be neither verifiednor compared to each other. Some papers solve this problem partially with estimates of ground truth by experts in the field (biologists or physicians). However, in many cases, such a ground truth estimate is very subjective and strongly varies between different experts. In order to overcome these difficulties, we have created a toolbox [1] that can generate 3D digital phantoms of specific cellular components along with their corresponding images degraded by specific optics and electronic

Druh

O - Ostatní výsledky

CEP obor

JD - Využití počítačů, robotika a její aplikace

OECD FORD obor

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Projekt

Výsledek vznikl pri realizaci vícero projektů. Více informací v záložce Projekty.

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2010

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů