JBUKER: AN OPEN SOURCE JAVA LIBRARY FOR READING AND WRITING BRUKER MAGNETIC RESONANCE IMAGING AND SPECTROSCOPY DATASETS

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F20%3APU138724" target="_blank" >RIV/00216305:26220/20:PU138724 - isvavai.cz</a>

Výsledek na webu

<a href="https://www.vedeckekonference.cz/index.php?option=com_content&view=article&id=88&Itemid=77&lang=en" target="_blank" >https://www.vedeckekonference.cz/index.php?option=com_content&view=article&id=88&Itemid=77&lang=en</a>

DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

JBUKER: AN OPEN SOURCE JAVA LIBRARY FOR READING AND WRITING BRUKER MAGNETIC RESONANCE IMAGING AND SPECTROSCOPY DATASETS

Popis výsledku v původním jazyce

Data accessing and management are critical factors of every magnetic resonance imaging and spectroscopy experiment. Easy accessing and handling datasets enables researchers to comprehend the structure of experiments and increases the convenience and speed of processing workflows. Bruker Biospin MRI system is the widely-used preclinical system in small animal measurements. The system stores acquired data in Bruker's proprietary format via ParaVision software. Even though Bruker datasets' structure is transparent, and several tools have been developed, there is no comprehensive solution to the Bruker raw data accessing problem. In particular, current tools do not provide the feature to access MR Spectroscopic Imaging dataset. This study will cover all the advantages and disadvantages of existing tools and then introduce our solution as an open-source application programming interface to allow direct access and handling of raw Bruker datasets. In the end, we will show a use case of our library in a well-developed software for CSI data sets quantification.

Název v anglickém jazyce

JBUKER: AN OPEN SOURCE JAVA LIBRARY FOR READING AND WRITING BRUKER MAGNETIC RESONANCE IMAGING AND SPECTROSCOPY DATASETS

Popis výsledku anglicky

Data accessing and management are critical factors of every magnetic resonance imaging and spectroscopy experiment. Easy accessing and handling datasets enables researchers to comprehend the structure of experiments and increases the convenience and speed of processing workflows. Bruker Biospin MRI system is the widely-used preclinical system in small animal measurements. The system stores acquired data in Bruker's proprietary format via ParaVision software. Even though Bruker datasets' structure is transparent, and several tools have been developed, there is no comprehensive solution to the Bruker raw data accessing problem. In particular, current tools do not provide the feature to access MR Spectroscopic Imaging dataset. This study will cover all the advantages and disadvantages of existing tools and then introduce our solution as an open-source application programming interface to allow direct access and handling of raw Bruker datasets. In the end, we will show a use case of our library in a well-developed software for CSI data sets quantification.

Druh

D - Stať ve sborníku

CEP obor

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OECD FORD obor

20601 - Medical engineering

Projekt

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Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2020

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název statě ve sborníku

INTERNATIONAL MASARYK CONFERENCE FOR PH.D. STUDENTS AND YOUNG RESEARCHERS

ISBN

978-80-87952-33-7

ISSN

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e-ISSN

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Počet stran výsledku

7

Strana od-do

1218-1224

Název nakladatele

MAGNANIMITAS

Místo vydání

Hradec Králové, Česká republika

Místo konání akce

Czech Republic

Datum konání akce

14. 12. 2020

Typ akce podle státní příslušnosti

WRD - Celosvětová akce

Kód UT WoS článku

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