Complete genome sequence of cherry virus T, a novel cherry-infecting tepovirus

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F25271121%3A_____%2F20%3AN0000120" target="_blank" >RIV/25271121:_____/20:N0000120 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/61989592:15310/20:73606527

Výsledek na webu

<a href="https://link.springer.com/article/10.1007%2Fs00705-020-04656-w" target="_blank" >https://link.springer.com/article/10.1007%2Fs00705-020-04656-w</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1007/s00705-020-04656-w" target="_blank" >10.1007/s00705-020-04656-w</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Complete genome sequence of cherry virus T, a novel cherry-infecting tepovirus

Popis výsledku v původním jazyce

Double-stranded RNA and total RNA purified from sour cherry leaves (Prunus cerasus, cv. Amarelka Chvalkovicka) was analyzed by high-throughput sequencing. BLAST annotation identified contigs with homology to several already known cherry-infecting viruses (prune dwarf virus, prunus necrotic ringspot virus, prunus virus F, little cherry virus 1) as well as contigs with sequences more distantly related to those of members of the family Betaflexiviridae and in particular to prunus virus T of the genus Tepovirus. The full genome sequence of a putative virus (6,847 nucleotides [nt]; GenBank no. MT090966) was assembled and completed at the genome ends. The genome has a typical tepovirus organization, contain-ing three overlapping open reading frames (ORFs), encoding a replication-associated protein, a movement protein and a capsid protein, respectively. Both its genome organization and its phylogenetic relationships show that the virus belongs to the genus Tepovirus, but considering the species demarcation criteria for the family Betaflexiviridae, it appears to represent a novel virus species, and we propose the name “cherry virus T” (ChVT) for this virus.

Název v anglickém jazyce

Complete genome sequence of cherry virus T, a novel cherry-infecting tepovirus

Popis výsledku anglicky

Double-stranded RNA and total RNA purified from sour cherry leaves (Prunus cerasus, cv. Amarelka Chvalkovicka) was analyzed by high-throughput sequencing. BLAST annotation identified contigs with homology to several already known cherry-infecting viruses (prune dwarf virus, prunus necrotic ringspot virus, prunus virus F, little cherry virus 1) as well as contigs with sequences more distantly related to those of members of the family Betaflexiviridae and in particular to prunus virus T of the genus Tepovirus. The full genome sequence of a putative virus (6,847 nucleotides [nt]; GenBank no. MT090966) was assembled and completed at the genome ends. The genome has a typical tepovirus organization, contain-ing three overlapping open reading frames (ORFs), encoding a replication-associated protein, a movement protein and a capsid protein, respectively. Both its genome organization and its phylogenetic relationships show that the virus belongs to the genus Tepovirus, but considering the species demarcation criteria for the family Betaflexiviridae, it appears to represent a novel virus species, and we propose the name “cherry virus T” (ChVT) for this virus.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10607 - Virology

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2020

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Archives of Virology

ISSN

0304-8608

e-ISSN

—

Svazek periodika

165

Číslo periodika v rámci svazku

7

Stát vydavatele periodika

AT - Rakouská republika

Počet stran výsledku

4

Strana od-do

1711-1714

Kód UT WoS článku

000532887000003

EID výsledku v databázi Scopus

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