An Evaluation of the Information Technology of Gene Expression Profiles Processing Stability for Different Levels of Noise Components

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F44555601%3A13440%2F18%3A43894141" target="_blank" >RIV/44555601:13440/18:43894141 - isvavai.cz</a>

Výsledek na webu

<a href="http://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=GeneralSearch&qid=3&SID=D4oY3FX1SDm3LATgKuu&page=1&doc=1" target="_blank" >http://apps.webofknowledge.com/full_record.do?product=WOS&search_mode=GeneralSearch&qid=3&SID=D4oY3FX1SDm3LATgKuu&page=1&doc=1</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.3390/data3040048" target="_blank" >10.3390/data3040048</a>

Jazyk výsledku

angličtina

Název v původním jazyce

An Evaluation of the Information Technology of Gene Expression Profiles Processing Stability for Different Levels of Noise Components

Popis výsledku v původním jazyce

This paper presents the results of research concerning the evaluation of stability of information technology of gene expression profiles processing with the use of gene expression profiles, which contain different levels of noise components. The information technology is presented as a structural block-chart, which contains all stages of the studied data processing. The hybrid model of objective clustering based on the SOTA algorithm and the technology of gene regulatory networks reconstruction have been investigated to evaluate the stability to the level of the noise components. The results of the simulation have shown that the hybrid model of the objective clustering has high level of stability to noise components and vice versa, the technology of gene regulatory networks reconstruction is rather sensitive to the level of noise component. The obtained results indicate the importance of gene expression profiles preprocessing at the early stage of the gene regulatory network reconstruction in order to remove background noise and non-informative genes in terms of the used criteria.

Název v anglickém jazyce

An Evaluation of the Information Technology of Gene Expression Profiles Processing Stability for Different Levels of Noise Components

Popis výsledku anglicky

This paper presents the results of research concerning the evaluation of stability of information technology of gene expression profiles processing with the use of gene expression profiles, which contain different levels of noise components. The information technology is presented as a structural block-chart, which contains all stages of the studied data processing. The hybrid model of objective clustering based on the SOTA algorithm and the technology of gene regulatory networks reconstruction have been investigated to evaluate the stability to the level of the noise components. The results of the simulation have shown that the hybrid model of the objective clustering has high level of stability to noise components and vice versa, the technology of gene regulatory networks reconstruction is rather sensitive to the level of noise component. The obtained results indicate the importance of gene expression profiles preprocessing at the early stage of the gene regulatory network reconstruction in order to remove background noise and non-informative genes in terms of the used criteria.

Druh

J_SC - Článek v periodiku v databázi SCOPUS

CEP obor

—

OECD FORD obor

10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)

Projekt

—

Návaznosti

N - Vyzkumna aktivita podporovana z neverejnych zdroju

Rok uplatnění

2018

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Data

ISSN

2306-5729

e-ISSN

—

Svazek periodika

3

Číslo periodika v rámci svazku

4

Stát vydavatele periodika

CH - Švýcarská konfederace

Počet stran výsledku

15

Strana od-do

1-15

Kód UT WoS článku

000454696600011

EID výsledku v databázi Scopus

2-s2.0-85070926550