Gensei: software for generating serial sections through objects with known statistical properties and simulating stereological quantification in 3D

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F49777513%3A23520%2F09%3A00502789" target="_blank" >RIV/49777513:23520/09:00502789 - isvavai.cz</a>

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Gensei: software for generating serial sections through objects with known statistical properties and simulating stereological quantification in 3D

Popis výsledku v původním jazyce

The software is used for generating series of two-dimensional sections through a volume filled with ellipsoids, cylinders and fibres with a priori known statistical properties. Arbitrary series of images are produced in order to represent models of histological structures, such as cells and fibres of the extracellular matrix forming biological tissues. These images represent either serial consecutive sections or sections sampled in a systematic uniform manner. The user can set the number and types of classes of three-dimensional objects (ellipsoids, cylinders), dimensions of the reference volume, size of the generated images, the number of objects and sections to be generated, length-to-width ratio and volume fraction of the objects. Three perpendicular series of sections through the same reference volume and the same objects may be generated, thus testing the isotropy of the objects. The output of the simulation is stored as three series of image files together with a detailed report

Název v anglickém jazyce

Gensei: software for generating serial sections through objects with known statistical properties and simulating stereological quantification in 3D

Popis výsledku anglicky

The software is used for generating series of two-dimensional sections through a volume filled with ellipsoids, cylinders and fibres with a priori known statistical properties. Arbitrary series of images are produced in order to represent models of histological structures, such as cells and fibres of the extracellular matrix forming biological tissues. These images represent either serial consecutive sections or sections sampled in a systematic uniform manner. The user can set the number and types of classes of three-dimensional objects (ellipsoids, cylinders), dimensions of the reference volume, size of the generated images, the number of objects and sections to be generated, length-to-width ratio and volume fraction of the objects. Three perpendicular series of sections through the same reference volume and the same objects may be generated, thus testing the isotropy of the objects. The output of the simulation is stored as three series of image files together with a detailed report

Druh

R - Software

CEP obor

EA - Morfologické obory a cytologie

OECD FORD obor

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Projekt

<a href="/cs/project/GA106%2F09%2F0740" target="_blank" >GA106/09/0740: Mikrostrukturálně orientované hierarchické modelování prokrvení mozku pro vyhodnocení CT perfúzního vyšetření</a><br>

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2009

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Interní identifikační kód produktu

gensei-2009.2

Technické parametry

ZČU, Univerzitní 8, R. Cimrman, tel.: 377 634 711, cimrman3@ntc.zcu.cz. Umožňuje simulovat histologické řezy buňkami a vlákny a hodnocení jejich objemů, povrchů a délek.

Ekonomické parametry

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IČO vlastníka výsledku

49777513

Název vlastníka

Západočeská univerzita v Plzni, Fakulta aplikovaných věd, Katedra mechaniky