Silvibacterium bohemicum gen. nov sp nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park
Identifikátory výsledku
Kód výsledku v IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F16%3A00467853" target="_blank" >RIV/61388971:_____/16:00467853 - isvavai.cz</a>
Výsledek na webu
<a href="http://dx.doi.org/10.1016/j.syapm.2015.12.005" target="_blank" >http://dx.doi.org/10.1016/j.syapm.2015.12.005</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/j.syapm.2015.12.005" target="_blank" >10.1016/j.syapm.2015.12.005</a>
Alternativní jazyky
Jazyk výsledku
angličtina
Název v původním jazyce
Silvibacterium bohemicum gen. nov sp nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park
Popis výsledku v původním jazyce
During the course of a study assessing the bacterial diversity of a coniferous forest soil (pH 3.8) in the Bohemian Forest National Park (Czech Republic), we isolated strain S15(T) which corresponded to one of the most abundant soil OTUs. Strain S15(T) is represented by Gram-negative, motile, rod-like cells that are 0.3-0.5 mu m in diameter and 0.9-1.1 mu m in length. Its pH range for growth was 3-6, with optimal conditions found at approximately 4-5. It can grow at temperatures between 20 degrees C and 28 degrees C, with optimum growth at 22-24 degrees C. Its respiratory quinone is MK-8, and its main fatty acid is iso-C-15:0 (73.7%). The G+C DNA content was 58.2 mol%. According to the 16S rRNA gene sequence analysis, strain S15T belongs to subdivision 1 of the phylum Acidobacteria, being affiliated to the cluster of Acidipila rosea AP8(T) and Acidobacterium capsulatum ATCC 51196(T). Analysis of the S15(T) genome revealed the presence of 404 genes that are involved in carbohydrate metabolism, which indicates the metabolic potential to degrade polysaccharides of plant and fungal origin. Based on genotypic and phenotypic characteristics, the strain S15(T) represents a new genus and species within the family Acidobacteriaceae, for which the name Silvibacterium bohemicum gen. nov., sp. nov. is proposed (type strain S15(T) = LMG 28607(T) = CECT 8790(T)).
Název v anglickém jazyce
Silvibacterium bohemicum gen. nov sp nov., an acidobacterium isolated from coniferous soil in the Bohemian Forest National Park
Popis výsledku anglicky
During the course of a study assessing the bacterial diversity of a coniferous forest soil (pH 3.8) in the Bohemian Forest National Park (Czech Republic), we isolated strain S15(T) which corresponded to one of the most abundant soil OTUs. Strain S15(T) is represented by Gram-negative, motile, rod-like cells that are 0.3-0.5 mu m in diameter and 0.9-1.1 mu m in length. Its pH range for growth was 3-6, with optimal conditions found at approximately 4-5. It can grow at temperatures between 20 degrees C and 28 degrees C, with optimum growth at 22-24 degrees C. Its respiratory quinone is MK-8, and its main fatty acid is iso-C-15:0 (73.7%). The G+C DNA content was 58.2 mol%. According to the 16S rRNA gene sequence analysis, strain S15T belongs to subdivision 1 of the phylum Acidobacteria, being affiliated to the cluster of Acidipila rosea AP8(T) and Acidobacterium capsulatum ATCC 51196(T). Analysis of the S15(T) genome revealed the presence of 404 genes that are involved in carbohydrate metabolism, which indicates the metabolic potential to degrade polysaccharides of plant and fungal origin. Based on genotypic and phenotypic characteristics, the strain S15(T) represents a new genus and species within the family Acidobacteriaceae, for which the name Silvibacterium bohemicum gen. nov., sp. nov. is proposed (type strain S15(T) = LMG 28607(T) = CECT 8790(T)).
Klasifikace
Druh
J<sub>x</sub> - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)
CEP obor
EE - Mikrobiologie, virologie
OECD FORD obor
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Návaznosti výsledku
Projekt
Výsledek vznikl pri realizaci vícero projektů. Více informací v záložce Projekty.
Návaznosti
P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)
Ostatní
Rok uplatnění
2016
Kód důvěrnosti údajů
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Údaje specifické pro druh výsledku
Název periodika
Systematic and Applied Microbiology
ISSN
0723-2020
e-ISSN
—
Svazek periodika
39
Číslo periodika v rámci svazku
FEB
Stát vydavatele periodika
DE - Spolková republika Německo
Počet stran výsledku
6
Strana od-do
14-19
Kód UT WoS článku
000370915000003
EID výsledku v databázi Scopus
2-s2.0-84983094563