Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61388971%3A_____%2F24%3A00585078" target="_blank" >RIV/61388971:_____/24:00585078 - isvavai.cz</a>

Výsledek na webu

<a href="https://link.springer.com/article/10.1007/s00239-024-10164-1" target="_blank" >https://link.springer.com/article/10.1007/s00239-024-10164-1</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1007/s00239-024-10164-1" target="_blank" >10.1007/s00239-024-10164-1</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host

Popis výsledku v původním jazyce

The bacterial strain SECRCQ15(T) was isolated from seeds of Chenopodium quinoa in Spain. Phylogenetic, chemotaxonomic, and phenotypic analyses, as well as genome similarity indices, support the classification of the strain into a novel species of the genus Ferdinandcohnia, for which we propose the name Ferdinandcohnia quinoae sp. nov. To dig deep into the speciation features of the strain SECRCQ15(T), we performed a comparative genomic analysis of the genome of this strain and those of the type strains of species from the genus Ferdinandcohnia. We found several genes related with plant growth-promoting mechanisms within the SECRCQ15(T) genome. We also found that singletons of F. quinoae SECRCQ15(T) are mainly related to the use of carbohydrates, which is a common trait of plant-associated bacteria. To further reveal speciation events in this strain, we revealed genes undergoing diversifying selection (e.g., genes encoding ribosomal proteins) and functions likely lost due to pseudogenization. Also, we found that this novel species contains 138 plant-associated gene-cluster functions that are unique within the genus Ferdinandcohnia. These features may explain both the ecological and taxonomical differentiation of this new taxon.

Název v anglickém jazyce

Speciation Features of Ferdinandcohnia quinoae sp. nov to Adapt to the Plant Host

Popis výsledku anglicky

The bacterial strain SECRCQ15(T) was isolated from seeds of Chenopodium quinoa in Spain. Phylogenetic, chemotaxonomic, and phenotypic analyses, as well as genome similarity indices, support the classification of the strain into a novel species of the genus Ferdinandcohnia, for which we propose the name Ferdinandcohnia quinoae sp. nov. To dig deep into the speciation features of the strain SECRCQ15(T), we performed a comparative genomic analysis of the genome of this strain and those of the type strains of species from the genus Ferdinandcohnia. We found several genes related with plant growth-promoting mechanisms within the SECRCQ15(T) genome. We also found that singletons of F. quinoae SECRCQ15(T) are mainly related to the use of carbohydrates, which is a common trait of plant-associated bacteria. To further reveal speciation events in this strain, we revealed genes undergoing diversifying selection (e.g., genes encoding ribosomal proteins) and functions likely lost due to pseudogenization. Also, we found that this novel species contains 138 plant-associated gene-cluster functions that are unique within the genus Ferdinandcohnia. These features may explain both the ecological and taxonomical differentiation of this new taxon.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10606 - Microbiology

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2024

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Journal of Molecular Evolution

ISSN

0022-2844

e-ISSN

1432-1432

Svazek periodika

92

Číslo periodika v rámci svazku

2

Stát vydavatele periodika

US - Spojené státy americké

Počet stran výsledku

12

Strana od-do

169-180

Kód UT WoS článku

001186725500002

EID výsledku v databázi Scopus

2-s2.0-85188101101