SNP analysis of Ukrainian maize inbreds with alternative state of molecular carotenogenesis marker crtRB1-3’TE

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F61389030%3A_____%2F24%3A00600459" target="_blank" >RIV/61389030:_____/24:00600459 - isvavai.cz</a>

Výsledek na webu

<a href="https://doi.org/10.15407/agrisp11.01.077" target="_blank" >https://doi.org/10.15407/agrisp11.01.077</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.15407/agrisp11.01.077" target="_blank" >10.15407/agrisp11.01.077</a>

Jazyk výsledku

angličtina

Název v původním jazyce

SNP analysis of Ukrainian maize inbreds with alternative state of molecular carotenogenesis marker crtRB1-3’TE

Popis výsledku v původním jazyce

SNP analysis and estimation of genetic relations in maize inbreds with the alternative state of beta-carotene hydroxylase 1 gene (crtRB1) by the molecular marker crtRB1-3'TE. Methods. SNP analysis, statistical methods. BDIIII panel with 384 SNP markers was used for comparative research of 35 maize inbreds developed and adopted in the northern Steppe of Ukraine. Results. SNP analysis of investigated inbred set showed that the part of dimorphic markers was 98.2 %, the average minor allele frequency (MAF) was 0.3040, the average polymorphism information content (PIC) was 0.3064, and the average shift of genetic diversity of markers was 0.3898. There was no significant difference between genetic SNP distances within both groups of inbreds with favourable/unfavourable alleles and between these groups by crtRB1-3'TE. The SNP distances were used to build a dendrogram of genetic relations between maize inbreds with an alternative state of the crtRB1-3'TE marker. Conclusions. The relationship between the allelic state of the beta-carotene hydroxylase 1 gene and single nucleotide polymorphism markers for maize inbreds is presented. The alleles of SNP markers BDI-III-130A, BDI-III-15A, BDI-III-60C, BDI-III-61C, BDI-III-116G, BDIIII-128A, and BDI-III-129. were found to be most frequent in the inbreds, which are carriers of the favourable allele of 543 bp of crtRB1 gene by the crtRB1-3'TE marker. The random distribution of alleles of this gene among maize inbreds developed in the northern Steppe of Ukraine was demonstrated.

Název v anglickém jazyce

SNP analysis of Ukrainian maize inbreds with alternative state of molecular carotenogenesis marker crtRB1-3’TE

Popis výsledku anglicky

SNP analysis and estimation of genetic relations in maize inbreds with the alternative state of beta-carotene hydroxylase 1 gene (crtRB1) by the molecular marker crtRB1-3'TE. Methods. SNP analysis, statistical methods. BDIIII panel with 384 SNP markers was used for comparative research of 35 maize inbreds developed and adopted in the northern Steppe of Ukraine. Results. SNP analysis of investigated inbred set showed that the part of dimorphic markers was 98.2 %, the average minor allele frequency (MAF) was 0.3040, the average polymorphism information content (PIC) was 0.3064, and the average shift of genetic diversity of markers was 0.3898. There was no significant difference between genetic SNP distances within both groups of inbreds with favourable/unfavourable alleles and between these groups by crtRB1-3'TE. The SNP distances were used to build a dendrogram of genetic relations between maize inbreds with an alternative state of the crtRB1-3'TE marker. Conclusions. The relationship between the allelic state of the beta-carotene hydroxylase 1 gene and single nucleotide polymorphism markers for maize inbreds is presented. The alleles of SNP markers BDI-III-130A, BDI-III-15A, BDI-III-60C, BDI-III-61C, BDI-III-116G, BDIIII-128A, and BDI-III-129. were found to be most frequent in the inbreds, which are carriers of the favourable allele of 543 bp of crtRB1 gene by the crtRB1-3'TE marker. The random distribution of alleles of this gene among maize inbreds developed in the northern Steppe of Ukraine was demonstrated.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

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OECD FORD obor

10608 - Biochemistry and molecular biology

Projekt

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Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2024

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Agricultural Science and Practice

ISSN

2312-3370

e-ISSN

2312-3389

Svazek periodika

11

Číslo periodika v rámci svazku

1

Stát vydavatele periodika

UA - Ukrajina

Počet stran výsledku

9

Strana od-do

77-85

Kód UT WoS článku

001250793600007

EID výsledku v databázi Scopus

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