Genome-Wide Identification and Analysis of B-Box Zinc Finger Gene Family in Sugarcane (Saccharum officinarum)

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62156489%3A43410%2F23%3A43923545" target="_blank" >RIV/62156489:43410/23:43923545 - isvavai.cz</a>

Výsledek na webu

<a href="https://doi.org/10.1016/j.jksus.2023.102720" target="_blank" >https://doi.org/10.1016/j.jksus.2023.102720</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/j.jksus.2023.102720" target="_blank" >10.1016/j.jksus.2023.102720</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Genome-Wide Identification and Analysis of B-Box Zinc Finger Gene Family in Sugarcane (Saccharum officinarum)

Popis výsledku v původním jazyce

Objective and methods: B-box-containing proteins are a kind of zinc finger (ZF) transcript protein that contains 1 otherwise 2 B-box domains even, in some cases, an additional CCT motif that is crucial for plant growth development and controlling biotic and abiotic stress. There has yet to be a comprehensive identification of the BBX genes in sugarcane by using bioinformatics tools/softwares. Results: Considered in the present research work, 21 Sugarcane genes were discovered by comprehensive bioinformatics analysis viz the phylogeny relationships, structures of genes, locations of chromosomes, gene duplication, subcellular localization, homology and codon analysis were analysed. Relying on phylogeny as well as domain constitution analysis, the identified genes must be divided into five clades. Eight out of ten Sugarcane chromosomes had an uneven distribution of Shbbxs. The significant proportion of sugarcane BBX proteins are expected to be found in nuclei and extracellular spaces. Conclusion: Our findings will serve as a foundation for subsequent functional findings of the BBX gene family, highlighting its roles in sugarcane. The findings will aid our understanding in the B-box gene family&apos;s complexity towards the abiotic stress responses, as well as provide suggestions for the imminent functional annotation of specific genes in sugarcane.

Název v anglickém jazyce

Genome-Wide Identification and Analysis of B-Box Zinc Finger Gene Family in Sugarcane (Saccharum officinarum)

Popis výsledku anglicky

Objective and methods: B-box-containing proteins are a kind of zinc finger (ZF) transcript protein that contains 1 otherwise 2 B-box domains even, in some cases, an additional CCT motif that is crucial for plant growth development and controlling biotic and abiotic stress. There has yet to be a comprehensive identification of the BBX genes in sugarcane by using bioinformatics tools/softwares. Results: Considered in the present research work, 21 Sugarcane genes were discovered by comprehensive bioinformatics analysis viz the phylogeny relationships, structures of genes, locations of chromosomes, gene duplication, subcellular localization, homology and codon analysis were analysed. Relying on phylogeny as well as domain constitution analysis, the identified genes must be divided into five clades. Eight out of ten Sugarcane chromosomes had an uneven distribution of Shbbxs. The significant proportion of sugarcane BBX proteins are expected to be found in nuclei and extracellular spaces. Conclusion: Our findings will serve as a foundation for subsequent functional findings of the BBX gene family, highlighting its roles in sugarcane. The findings will aid our understanding in the B-box gene family&apos;s complexity towards the abiotic stress responses, as well as provide suggestions for the imminent functional annotation of specific genes in sugarcane.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

40106 - Agronomy, plant breeding and plant protection; (Agricultural biotechnology to be 4.4)

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2023

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Journal of King Saud University - Science

ISSN

1018-3647

e-ISSN

2213-686X

Svazek periodika

35

Číslo periodika v rámci svazku

6

Stát vydavatele periodika

NL - Nizozemsko

Počet stran výsledku

11

Strana od-do

102720

Kód UT WoS článku

001054054900001

EID výsledku v databázi Scopus

2-s2.0-85161503025