Content-aware Nakagami morphing for incremental brain MRI

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62690094%3A18450%2F24%3A50021395" target="_blank" >RIV/62690094:18450/24:50021395 - isvavai.cz</a>

Výsledek na webu

<a href="https://www.sciencedirect.com/science/article/pii/S0950705124002107?via%3Dihub" target="_blank" >https://www.sciencedirect.com/science/article/pii/S0950705124002107?via%3Dihub</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/j.knosys.2024.111575" target="_blank" >10.1016/j.knosys.2024.111575</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Content-aware Nakagami morphing for incremental brain MRI

Popis výsledku v původním jazyce

Within the carcinogenesis mechanism, from the initiation of the very first tumor cell to the preneoplastic and neoplastic cancer cell groups, cancer cells omnidirectionally and unpredictably proliferate in three-dimensional (3D) space during the promotion and progression steps. Whole tumors areas, consisting of edema, necrosis, enhancing and non-enhancing tumor subareas, could easily be identified by the typical sequences of magnetic resonance imaging (MRI), mostly by FLAIR, the fluid attenuated inversion recovery sequence. Depending on the increment value of the scanner, not every scan could be contiguous though, which might create some gaps between the slices and cause some crucial loss of information. Shape-based morphing by erosion and dilation operations might be inadequate when the source or target lesions are not found on the MRI slices, which might emerge due to unpredictable shape of tumors. Furthermore, the real trajectories and genuine shapes of the tumors in spatial view might not be seen in the planar MRI slices due to approximations during the voxel-to-pixel transformations executed in MRI devices. Therefore, we propose a novel content-aware morphing procedure to generate imaginary slices by m-parametric Nakagami imaging. The mathematical and parametric design in our framework not only leads to precise segmentation of the whole tumors according to the ground truth images; but also, to realistic morphing, based on the content of tumor footprints in MRI slices. For testing purposes, a total number of 5133 morphs are created using 1831 genuine images containing at least one lesion taken from the Brats 2012 dataset. Given the average dice score coefficients (DSC), we obtained an average of 88.44% DSC with our morphing framework outperforming the conventional dilation-based morphing result which is 83.25%. Besides being a novel morphing methodology, the outcomes of this research could also be very beneficial in smoother 3D reconstruction and more realistic volumetric calculations of lesions to help the experts working on assessment of lesions. © 2024 Elsevier B.V.

Název v anglickém jazyce

Content-aware Nakagami morphing for incremental brain MRI

Popis výsledku anglicky

Within the carcinogenesis mechanism, from the initiation of the very first tumor cell to the preneoplastic and neoplastic cancer cell groups, cancer cells omnidirectionally and unpredictably proliferate in three-dimensional (3D) space during the promotion and progression steps. Whole tumors areas, consisting of edema, necrosis, enhancing and non-enhancing tumor subareas, could easily be identified by the typical sequences of magnetic resonance imaging (MRI), mostly by FLAIR, the fluid attenuated inversion recovery sequence. Depending on the increment value of the scanner, not every scan could be contiguous though, which might create some gaps between the slices and cause some crucial loss of information. Shape-based morphing by erosion and dilation operations might be inadequate when the source or target lesions are not found on the MRI slices, which might emerge due to unpredictable shape of tumors. Furthermore, the real trajectories and genuine shapes of the tumors in spatial view might not be seen in the planar MRI slices due to approximations during the voxel-to-pixel transformations executed in MRI devices. Therefore, we propose a novel content-aware morphing procedure to generate imaginary slices by m-parametric Nakagami imaging. The mathematical and parametric design in our framework not only leads to precise segmentation of the whole tumors according to the ground truth images; but also, to realistic morphing, based on the content of tumor footprints in MRI slices. For testing purposes, a total number of 5133 morphs are created using 1831 genuine images containing at least one lesion taken from the Brats 2012 dataset. Given the average dice score coefficients (DSC), we obtained an average of 88.44% DSC with our morphing framework outperforming the conventional dilation-based morphing result which is 83.25%. Besides being a novel morphing methodology, the outcomes of this research could also be very beneficial in smoother 3D reconstruction and more realistic volumetric calculations of lesions to help the experts working on assessment of lesions. © 2024 Elsevier B.V.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10201 - Computer sciences, information science, bioinformathics (hardware development to be 2.2, social aspect to be 5.8)

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2024

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Knowledge-based systems

ISSN

0950-7051

e-ISSN

1872-7409

Svazek periodika

291

Číslo periodika v rámci svazku

May

Stát vydavatele periodika

NL - Nizozemsko

Počet stran výsledku

16

Strana od-do

"Article number: 111575"

Kód UT WoS článku

001205504400001

EID výsledku v databázi Scopus

2-s2.0-85186668961