GenEx Software library for object detection in genetical analysis evaluation

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985556%3A_____%2F14%3A00438032" target="_blank" >RIV/67985556:_____/14:00438032 - isvavai.cz</a>

Výsledek na webu

<a href="http://zoi.utia.cas.cz/node/805" target="_blank" >http://zoi.utia.cas.cz/node/805</a>

DOI - Digital Object Identifier

—

Jazyk výsledku

angličtina

Název v původním jazyce

GenEx Software library for object detection in genetical analysis evaluation

Popis výsledku v původním jazyce

This package contains GenEx software library for analysis of FISH microscopy image. The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters. It can process arbitrary number of signal channels. Main purpose of the library is to take the input set of 2D images from wide-field fluorescence miscroscope, to detect objects contained in these images, to filter them using either a simple filteror a classifier. Finally, the parameters of the objects are provided in the form of a CSV file for further analysis. Simple graphical editor is included to provide expert input for object classification. The library has been coded in Java on top of theImageJ library and may be used either as an ImageJ plugin or as a Java package. The pilot application for this library has been in a diagnostics system for mosaic form of the Turner syndrom (chromosomal abnormality in which part of the X

Název v anglickém jazyce

GenEx Software library for object detection in genetical analysis evaluation

Popis výsledku anglicky

This package contains GenEx software library for analysis of FISH microscopy image. The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters. It can process arbitrary number of signal channels. Main purpose of the library is to take the input set of 2D images from wide-field fluorescence miscroscope, to detect objects contained in these images, to filter them using either a simple filteror a classifier. Finally, the parameters of the objects are provided in the form of a CSV file for further analysis. Simple graphical editor is included to provide expert input for object classification. The library has been coded in Java on top of theImageJ library and may be used either as an ImageJ plugin or as a Java package. The pilot application for this library has been in a diagnostics system for mosaic form of the Turner syndrom (chromosomal abnormality in which part of the X

Druh

R - Software

CEP obor

JC - Počítačový hardware a software

OECD FORD obor

—

Projekt

<a href="/cs/project/TA01010931" target="_blank" >TA01010931: Systém pro podporu vyhodnocování metody FISH</a><br>

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2014

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Interní identifikační kód produktu

ZOI-soft-0438032

Technické parametry

This package contains GenEx software library for analysis of FISH microscopy image.

Ekonomické parametry

The purpose of this library is to detect round cell nuclei in the DAPI channel and fluorescence signals contained therein and to evaluate their shape and intensity parameters.

IČO vlastníka výsledku

67985556

Název vlastníka

Ústav teorie informace a automatizace AV ČR, v.v