Population Genomic Analysis of Diploid-Autopolyploid Species

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F67985939%3A_____%2F23%3A00605499" target="_blank" >RIV/67985939:_____/23:00605499 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/00216208:11310/23:10477453

Výsledek na webu

<a href="https://link.springer.com/protocol/10.1007/978-1-0716-2561-3_16" target="_blank" >https://link.springer.com/protocol/10.1007/978-1-0716-2561-3_16</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1007/978-1-0716-2561-3_16" target="_blank" >10.1007/978-1-0716-2561-3_16</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Population Genomic Analysis of Diploid-Autopolyploid Species

Popis výsledku v původním jazyce

This chapter outlines an empirical analysis of genome-wide single-nucleotide polymorphism (SNP) variation and its underlying drivers among multiple natural populations within a diploid-autopolyploid species. The aim is to reconstruct the genetic structure among natural populations of varying ploidy and infer footprints of selection in these populations, framed around specific questions that are typically encountered when analyzing a mixed-ploidy data set,e.g., addressing the relevance of natural whole-genome duplication for speciation and adaptation. We briefly review the options for the analysis of polyploid population genomic data involving variant calling, population structure, demographic history inference, and selection scanning approaches. Further, we provide suggestions for methods and associated software, possible caveats, and examples of their application to mixed-ploidy and autopolyploid data sets.

Název v anglickém jazyce

Population Genomic Analysis of Diploid-Autopolyploid Species

Popis výsledku anglicky

This chapter outlines an empirical analysis of genome-wide single-nucleotide polymorphism (SNP) variation and its underlying drivers among multiple natural populations within a diploid-autopolyploid species. The aim is to reconstruct the genetic structure among natural populations of varying ploidy and infer footprints of selection in these populations, framed around specific questions that are typically encountered when analyzing a mixed-ploidy data set,e.g., addressing the relevance of natural whole-genome duplication for speciation and adaptation. We briefly review the options for the analysis of polyploid population genomic data involving variant calling, population structure, demographic history inference, and selection scanning approaches. Further, we provide suggestions for methods and associated software, possible caveats, and examples of their application to mixed-ploidy and autopolyploid data sets.

Druh

C - Kapitola v odborné knize

CEP obor

—

OECD FORD obor

10611 - Plant sciences, botany

Projekt

—

Návaznosti

I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2023

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název knihy nebo sborníku

Polyploidy: Methods and Protokols

ISBN

978-1-0716-2560-6

Počet stran výsledku

28

Strana od-do

297-324

Počet stran knihy

531

Název nakladatele

Humana

Místo vydání

New York

Kód UT WoS kapitoly

001077786900017