Agrobacterium bohemicum sp nov isolated from poppy seed wastes in central Bohemia

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F86652036%3A_____%2F18%3A00491932" target="_blank" >RIV/86652036:_____/18:00491932 - isvavai.cz</a>

Nalezeny alternativní kódy

RIV/61388971:_____/18:00491875 RIV/00216208:11130/18:10375529 RIV/00216208:11310/18:10375529 RIV/00064203:_____/18:10375529

Výsledek na webu

<a href="http://dx.doi.org/10.1016/j.syapm.2018.01.003" target="_blank" >http://dx.doi.org/10.1016/j.syapm.2018.01.003</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1016/j.syapm.2018.01.003" target="_blank" >10.1016/j.syapm.2018.01.003</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Agrobacterium bohemicum sp nov isolated from poppy seed wastes in central Bohemia

Popis výsledku v původním jazyce

Two non-pathogenic strains R89-1 and R90(T) isolated from poppy seed (Papaver somniferum L.) wastes were phenotypically and genotypically characterized. Multilocus sequence analysis (MLSA) was conducted with six genes (atpD, ginA, gyrB, recA, rpoB, 16S rRNA). The strains represented a new species which clustered with Agrobacterium rubi NBRC 13261(T) and Agrobacterium skierniewicense Ch1 1(T) type strains. MLSA was further accompanied by whole-genome phylogeny, in silico DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses for both strains. ANI and dDDH values were deep below the species delineation threshold. Phenotypic features of the novel strains unequivocally allowed their differentiation from all other Agrobacterium species. Unlike other agrobacteria, the strains were salt sensitive and were able to biotransform morphine alkaloids. The dominant cellular fatty acids are 18:1 w7c, 16:0 and 12:0 aldehyde/16:1 iso I/14:0 30H summed in feature 2 and the major respiratory quinine is Q-10 (87%). The DNA G + C content is 56 mol%. Microbial community analysis indicated probable association with P. somniferum plant material. Altogether, these characteristics showed that strains R90(T) and R89-1 represent a new species of the genus Agrobacterium which we propose to name Agrobacterium bohemicum. The type strain of A. bohemicum is R90(T) (=CCM 8736(T) = DSM 104667(T)). (C) 2018 Elsevier GmbH. All rights reserved.

Název v anglickém jazyce

Agrobacterium bohemicum sp nov isolated from poppy seed wastes in central Bohemia

Popis výsledku anglicky

Two non-pathogenic strains R89-1 and R90(T) isolated from poppy seed (Papaver somniferum L.) wastes were phenotypically and genotypically characterized. Multilocus sequence analysis (MLSA) was conducted with six genes (atpD, ginA, gyrB, recA, rpoB, 16S rRNA). The strains represented a new species which clustered with Agrobacterium rubi NBRC 13261(T) and Agrobacterium skierniewicense Ch1 1(T) type strains. MLSA was further accompanied by whole-genome phylogeny, in silico DNA-DNA hybridization (dDDH) and average nucleotide identity (ANI) analyses for both strains. ANI and dDDH values were deep below the species delineation threshold. Phenotypic features of the novel strains unequivocally allowed their differentiation from all other Agrobacterium species. Unlike other agrobacteria, the strains were salt sensitive and were able to biotransform morphine alkaloids. The dominant cellular fatty acids are 18:1 w7c, 16:0 and 12:0 aldehyde/16:1 iso I/14:0 30H summed in feature 2 and the major respiratory quinine is Q-10 (87%). The DNA G + C content is 56 mol%. Microbial community analysis indicated probable association with P. somniferum plant material. Altogether, these characteristics showed that strains R90(T) and R89-1 represent a new species of the genus Agrobacterium which we propose to name Agrobacterium bohemicum. The type strain of A. bohemicum is R90(T) (=CCM 8736(T) = DSM 104667(T)). (C) 2018 Elsevier GmbH. All rights reserved.

Druh

J_imp - Článek v periodiku v databázi Web of Science

CEP obor

—

OECD FORD obor

10608 - Biochemistry and molecular biology

Projekt

<a href="/cs/project/ED2.1.00%2F19.0390" target="_blank" >ED2.1.00/19.0390: Vnesení nových výzkumných metod do centra BIOCEV</a><br>

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2018

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Systematic and Applied Microbiology

ISSN

0723-2020

e-ISSN

—

Svazek periodika

41

Číslo periodika v rámci svazku

3

Stát vydavatele periodika

DE - Spolková republika Německo

Počet stran výsledku

7

Strana od-do

184-190

Kód UT WoS článku

000437220000004

EID výsledku v databázi Scopus

2-s2.0-85041295103