Whole genome sequencing of pathogenic and nonpathogenic treponemes: comparison of syphilis and yaws strains with T. paraluiscuniculi.

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216224%3A14110%2F09%3A00029916" target="_blank" >RIV/00216224:14110/09:00029916 - isvavai.cz</a>

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Whole genome sequencing of pathogenic and nonpathogenic treponemes: comparison of syphilis and yaws strains with T. paraluiscuniculi.

Popis výsledku v původním jazyce

Treponema pallidum subsp. pallidum (TPA) is the causative agent of syphilis, T. pallidum ssp. pertenue (TPE) causes endemic treponematosis yaws, and T. paraluiscuniculi is not infectious to humans but causes venereal spirochetosis in rabbits. The genomesof TPE strain Samoa D and T. paraluiscuniculi strain Cuniculi A were sequenced using several whole-genome sequencing methods. Obtained whole genome sequences were compared to the published sequence of TPA strain Nichols. The genome size of TPA Nichols (1,138,006 bp), TPE Samoa D (1,139,299 bp) and T. paraluiscuniculi Cuniculi A (1,133,391 bp) and the overall gene order is similar in all investigated genomes. More than 50% of Nichols and Samoa D genes encode sequentially identical proteins whereas only15% of those genes were found in the Cuniculi A and Samoa D genomes. Major sequence changes including frameshifts were found in 88 genes of the Cuniculi A genome when compared to the Nichols genome.

Název v anglickém jazyce

Whole genome sequencing of pathogenic and nonpathogenic treponemes: comparison of syphilis and yaws strains with T. paraluiscuniculi.

Popis výsledku anglicky

Treponema pallidum subsp. pallidum (TPA) is the causative agent of syphilis, T. pallidum ssp. pertenue (TPE) causes endemic treponematosis yaws, and T. paraluiscuniculi is not infectious to humans but causes venereal spirochetosis in rabbits. The genomesof TPE strain Samoa D and T. paraluiscuniculi strain Cuniculi A were sequenced using several whole-genome sequencing methods. Obtained whole genome sequences were compared to the published sequence of TPA strain Nichols. The genome size of TPA Nichols (1,138,006 bp), TPE Samoa D (1,139,299 bp) and T. paraluiscuniculi Cuniculi A (1,133,391 bp) and the overall gene order is similar in all investigated genomes. More than 50% of Nichols and Samoa D genes encode sequentially identical proteins whereas only15% of those genes were found in the Cuniculi A and Samoa D genomes. Major sequence changes including frameshifts were found in 88 genes of the Cuniculi A genome when compared to the Nichols genome.

Druh

D - Stať ve sborníku

CEP obor

EB - Genetika a molekulární biologie

OECD FORD obor

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Projekt

Výsledek vznikl pri realizaci vícero projektů. Více informací v záložce Projekty.

Návaznosti

Z - Vyzkumny zamer (s odkazem do CEZ)

Rok uplatnění

2009

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název statě ve sborníku

Clinical Microbiology and Infection, Volume 15, Issue s4, Abstracts of the 19th ECCMID, P1329

ISBN

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ISSN

1198-743X

e-ISSN

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Počet stran výsledku

1

Strana od-do

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Název nakladatele

European Society of Clinical Microbiology and Infectious Diseases

Místo vydání

Neuveden

Místo konání akce

Helsinki

Datum konání akce

16. 5. 2009

Typ akce podle státní příslušnosti

EUR - Evropská akce

Kód UT WoS článku

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