Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F60077344%3A_____%2F12%3A00382315" target="_blank" >RIV/60077344:_____/12:00382315 - isvavai.cz</a>

Výsledek na webu

<a href="http://dx.doi.org/10.1111/j.1439-0434.2012.01919.x" target="_blank" >http://dx.doi.org/10.1111/j.1439-0434.2012.01919.x</a>

DOI - Digital Object Identifier

<a href="http://dx.doi.org/10.1111/j.1439-0434.2012.01919.x" target="_blank" >10.1111/j.1439-0434.2012.01919.x</a>

Jazyk výsledku

angličtina

Název v původním jazyce

Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

Popis výsledku v původním jazyce

Conserved block III of the RNA polymerase L gene is predicted to be essential for RNA polymerase function of cytorhabdoviruses and may be a target in exploringevolutionary relationships among rhabdoviruses. Sequence comparison of an amplified segment ofthepolymerase gene isolated from six English ivy samples revealed its high similarity with known plant cytorhabdoviruses. Lettuce yellow mottle viruswas recognized as a closely related virus with 79.6% aa identity in the amplified region of the CB2 isolate and around 70% aa identity for the CB1, CB6 and CB18 isolates. The CB11 and CB16 isolates show a closer relationship to Raspberry vein chlorosis virus, with 75 and 69% aa identity, respectively. These data in combination with phylogenetic analyses resulted in discrimination of four new rhabdoviruses. The names Ivy latent viruses 1, 2, 3 and 4 (IvLV1, IvLV2, IvLV3 and IvLV4) are proposed for these viruses.

Název v anglickém jazyce

Bioinformatic analysis of the L polymerase gene leads to discrimination of new rhabdoviruses

Popis výsledku anglicky

Conserved block III of the RNA polymerase L gene is predicted to be essential for RNA polymerase function of cytorhabdoviruses and may be a target in exploringevolutionary relationships among rhabdoviruses. Sequence comparison of an amplified segment ofthepolymerase gene isolated from six English ivy samples revealed its high similarity with known plant cytorhabdoviruses. Lettuce yellow mottle viruswas recognized as a closely related virus with 79.6% aa identity in the amplified region of the CB2 isolate and around 70% aa identity for the CB1, CB6 and CB18 isolates. The CB11 and CB16 isolates show a closer relationship to Raspberry vein chlorosis virus, with 75 and 69% aa identity, respectively. These data in combination with phylogenetic analyses resulted in discrimination of four new rhabdoviruses. The names Ivy latent viruses 1, 2, 3 and 4 (IvLV1, IvLV2, IvLV3 and IvLV4) are proposed for these viruses.

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

EE - Mikrobiologie, virologie

OECD FORD obor

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Projekt

<a href="/cs/project/GAP501%2F12%2F1747" target="_blank" >GAP501/12/1747: Diverzita a distribuce virů mezi lišejníky</a><br>

Návaznosti

Z - Vyzkumny zamer (s odkazem do CEZ)<br>I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace

Rok uplatnění

2012

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Journal of Phytopathology - Phytopathologische Zeitschrift

ISSN

0931-1785

e-ISSN

—

Svazek periodika

160

Číslo periodika v rámci svazku

7-8

Stát vydavatele periodika

DE - Spolková republika Německo

Počet stran výsledku

5

Strana od-do

377-381

Kód UT WoS článku

000305897900009

EID výsledku v databázi Scopus

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