Box counting method in recording, processing and evaluation of genomic signals

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F62156489%3A43210%2F10%3A00184582" target="_blank" >RIV/62156489:43210/10:00184582 - isvavai.cz</a>

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Box counting method in recording, processing and evaluation of genomic signals

Popis výsledku v původním jazyce

Fractals are geometrical shapes with non integer dimension and invariance against change of scale factor. For each geometrical shape, a single parameter - dimension - can be calculated. For calculation, Box Counting Method (BCM) was chosen. Determinationof dimension on one level of resolution is not sufficient, it is necessary to subsequently process it and determine multifractal coefficient. Aim of our interest consists in analysis of images obtained from a linear sequence of DNA code. For analysis itself, sequences of Homo sapiens and Citrobacter youngae were chosen. Results of calculation are fractal coefficients derived from dimensions of generated structures. This result enables to introduce criterion for sequences determination. Graphical outputs may be also represented as multidimensional alternative transformation of linearly recorded genomic signal. Algorithms were developed in computational environment MATLAB. Data were downloaded from a public database EMBL (ESI) and GenBan

Název v anglickém jazyce

Box counting method in recording, processing and evaluation of genomic signals

Popis výsledku anglicky

Fractals are geometrical shapes with non integer dimension and invariance against change of scale factor. For each geometrical shape, a single parameter - dimension - can be calculated. For calculation, Box Counting Method (BCM) was chosen. Determinationof dimension on one level of resolution is not sufficient, it is necessary to subsequently process it and determine multifractal coefficient. Aim of our interest consists in analysis of images obtained from a linear sequence of DNA code. For analysis itself, sequences of Homo sapiens and Citrobacter youngae were chosen. Results of calculation are fractal coefficients derived from dimensions of generated structures. This result enables to introduce criterion for sequences determination. Graphical outputs may be also represented as multidimensional alternative transformation of linearly recorded genomic signal. Algorithms were developed in computational environment MATLAB. Data were downloaded from a public database EMBL (ESI) and GenBan

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

CB - Analytická chemie, separace

OECD FORD obor

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Projekt

Výsledek vznikl pri realizaci vícero projektů. Více informací v záložce Projekty.

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2010

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Journal of Biochemical Technology

ISSN

0974-2328

e-ISSN

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Svazek periodika

2

Číslo periodika v rámci svazku

5

Stát vydavatele periodika

IN - Indická republika

Počet stran výsledku

3

Strana od-do

91-93

Kód UT WoS článku

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EID výsledku v databázi Scopus

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