De novo transcriptome assembly of heavy metal tolerant Silene dioica
Identifikátory výsledku
Kód výsledku v IS VaVaI
<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F68081707%3A_____%2F17%3A00507080" target="_blank" >RIV/68081707:_____/17:00507080 - isvavai.cz</a>
Nalezeny alternativní kódy
RIV/61389030:_____/17:00475870
Výsledek na webu
<a href="https://doi.org/10.1016/j.gdata.2017.01.004" target="_blank" >https://doi.org/10.1016/j.gdata.2017.01.004</a>
DOI - Digital Object Identifier
<a href="http://dx.doi.org/10.1016/j.gdata.2017.01.004" target="_blank" >10.1016/j.gdata.2017.01.004</a>
Alternativní jazyky
Jazyk výsledku
angličtina
Název v původním jazyce
De novo transcriptome assembly of heavy metal tolerant Silene dioica
Popis výsledku v původním jazyce
Silene dioica is a dioecious plant of the family Caryophyllaceae. In the present study, we used Illumina sequencing technology (MiSeq) to sequence, de novo assembly and annotate the transcriptomes of male and female copper tolerant S. dioica individuals. We sequenced the normalized mRNA of roots, shoots, flower buds and flowers for each sex. Raw reads of the transcriptome assembly project for S. dioica male and female individual have been deposited in NCBI's Sequence Read Archive (SRA) database with the accession number SRP094611. The Trinity and Detonate program was used to de novo assembly 92,347 transcripts for male and 94,757 transcripts for female transcriptome. The assembled transcriptome sequences for S. dioica male and female individuals can be accessed at NCBI with the following accession numbers: GFCG00000000 (male), GFCH00000000 (female). The obtained transcriptomic data will be useful for further studies focusing on copper tolerance, comparative transcriptome analysis with other Silene species and sex chromosomes evolution. (C) 2017 The Authors. Published by Elsevier Inc.
Název v anglickém jazyce
De novo transcriptome assembly of heavy metal tolerant Silene dioica
Popis výsledku anglicky
Silene dioica is a dioecious plant of the family Caryophyllaceae. In the present study, we used Illumina sequencing technology (MiSeq) to sequence, de novo assembly and annotate the transcriptomes of male and female copper tolerant S. dioica individuals. We sequenced the normalized mRNA of roots, shoots, flower buds and flowers for each sex. Raw reads of the transcriptome assembly project for S. dioica male and female individual have been deposited in NCBI's Sequence Read Archive (SRA) database with the accession number SRP094611. The Trinity and Detonate program was used to de novo assembly 92,347 transcripts for male and 94,757 transcripts for female transcriptome. The assembled transcriptome sequences for S. dioica male and female individuals can be accessed at NCBI with the following accession numbers: GFCG00000000 (male), GFCH00000000 (female). The obtained transcriptomic data will be useful for further studies focusing on copper tolerance, comparative transcriptome analysis with other Silene species and sex chromosomes evolution. (C) 2017 The Authors. Published by Elsevier Inc.
Klasifikace
Druh
J<sub>imp</sub> - Článek v periodiku v databázi Web of Science
CEP obor
—
OECD FORD obor
10603 - Genetics and heredity (medical genetics to be 3)
Návaznosti výsledku
Projekt
—
Návaznosti
I - Institucionalni podpora na dlouhodoby koncepcni rozvoj vyzkumne organizace
Ostatní
Rok uplatnění
2017
Kód důvěrnosti údajů
S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů
Údaje specifické pro druh výsledku
Název periodika
GENOMICS DATA
ISSN
2213-5960
e-ISSN
—
Svazek periodika
11
Číslo periodika v rámci svazku
MAR 2017
Stát vydavatele periodika
NL - Nizozemsko
Počet stran výsledku
2
Strana od-do
118-119
Kód UT WoS článku
000395325800030
EID výsledku v databázi Scopus
—