Power Spectrum Method for the Processing of the DNA in the Genome Sequencing

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26220%2F15%3APU114688" target="_blank" >RIV/00216305:26220/15:PU114688 - isvavai.cz</a>

Výsledek na webu

<a href="http://www.piers.org" target="_blank" >http://www.piers.org</a>

DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Power Spectrum Method for the Processing of the DNA in the Genome Sequencing

Popis výsledku v původním jazyce

The fractal systems are broadly found throughout the nature, generally in any scale. For each dimension (1D, 2D . . . ) in any structures and in any mathematical algorithms or in any object (sequence, line, square) its dimension can be calculated. These dimensions are speci¯c parameters for description of the DNA sequence characters ACGT strings. Generally a ¯rst step consists in the converting of a one-dimensional sequence into the image. In the second step, the method for calculating the dimensions for all scales is selected. For the calculations of the above mentioned dimensions the Power Spectrum (PS) method has been proposed and examined. The Power Spectrum method provides universal calculation of dimension and it allows to obtain the resulting multifractal coe±cient. The multifractal coe±cient represents the means rate of approximation to ideal power spectrum. It has to be emphasized that the multifractal coe±cient is independent of any scale to be chosen. Moreover, the multifractal coe±cient serves as an advanced parameter for mathematical description of analyzed speci¯c sequence of the deoxyribonucleic acid (DNA) or the whole genome. The conversion of the sequence into the image as the ¯rst step of the pre-processing can be used also for the alternative imaging and the description of sequence and it is possible to choose another method for the processing and analyzing a fractal image (for example Box Counting method). In the paper, the method for the processing of the DNA in the genome sequencing, the Power Spectrum method, will be introduced. The results of the Power Spectrum methods will be presented also.

Název v anglickém jazyce

Power Spectrum Method for the Processing of the DNA in the Genome Sequencing

Popis výsledku anglicky

The fractal systems are broadly found throughout the nature, generally in any scale. For each dimension (1D, 2D . . . ) in any structures and in any mathematical algorithms or in any object (sequence, line, square) its dimension can be calculated. These dimensions are speci¯c parameters for description of the DNA sequence characters ACGT strings. Generally a ¯rst step consists in the converting of a one-dimensional sequence into the image. In the second step, the method for calculating the dimensions for all scales is selected. For the calculations of the above mentioned dimensions the Power Spectrum (PS) method has been proposed and examined. The Power Spectrum method provides universal calculation of dimension and it allows to obtain the resulting multifractal coe±cient. The multifractal coe±cient represents the means rate of approximation to ideal power spectrum. It has to be emphasized that the multifractal coe±cient is independent of any scale to be chosen. Moreover, the multifractal coe±cient serves as an advanced parameter for mathematical description of analyzed speci¯c sequence of the deoxyribonucleic acid (DNA) or the whole genome. The conversion of the sequence into the image as the ¯rst step of the pre-processing can be used also for the alternative imaging and the description of sequence and it is possible to choose another method for the processing and analyzing a fractal image (for example Box Counting method). In the paper, the method for the processing of the DNA in the genome sequencing, the Power Spectrum method, will be introduced. The results of the Power Spectrum methods will be presented also.

Druh

D - Stať ve sborníku

CEP obor

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OECD FORD obor

20201 - Electrical and electronic engineering

Projekt

<a href="/cs/project/LO1401" target="_blank" >LO1401: Interdisciplinární výzkum bezdrátových technologií</a><br>

Návaznosti

P - Projekt vyzkumu a vyvoje financovany z verejnych zdroju (s odkazem do CEP)

Rok uplatnění

2015

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název statě ve sborníku

Draft Proceedings of Progress In Electromagnetics Research Symposium PIERS 2015 Prague

ISBN

978-1-934142-30-1

ISSN

1559-9450

e-ISSN

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Počet stran výsledku

4

Strana od-do

1337-1340

Název nakladatele

The Electromagnetics Academy

Místo vydání

Cambridge, MA, USA

Místo konání akce

Praha

Datum konání akce

6. 7. 2015

Typ akce podle státní příslušnosti

WRD - Celosvětová akce

Kód UT WoS článku

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