Evaluation of Biological Sequence Similarity Using FPGA Technology

Kód výsledku v IS VaVaI

<a href="https://www.isvavai.cz/riv?ss=detail&h=RIV%2F00216305%3A26230%2F10%3APU91971" target="_blank" >RIV/00216305:26230/10:PU91971 - isvavai.cz</a>

Výsledek na webu

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DOI - Digital Object Identifier

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Jazyk výsledku

angličtina

Název v původním jazyce

Evaluation of Biological Sequence Similarity Using FPGA Technology

Popis výsledku v původním jazyce

Understanding structure and function of DNA sequences represents one of the most important goals in area of modern biology research. However, algorithms for DNA analysis are usually complicated by mutations caused by an evolution process, which are usually occurred in form of character insertion, deletion and substitution.  With respect to these defects the time complexity of the algorithms grows and limits their practical usage. Techniques for an acceleration of the key operations using specific circuits bring a certain expectation into this area.  The designed circuits are able to achieve the speedup in orders of thousands in comparison to the most powerful conventional processors.  Despite of huge performance of these circuits they are not used in wide range of real word applications.  The main reason lies in often variability of input tasks that leads to change of architecture sizes with respect to the target platform properties. These modifications usually require an interventio

Název v anglickém jazyce

Evaluation of Biological Sequence Similarity Using FPGA Technology

Popis výsledku anglicky

Understanding structure and function of DNA sequences represents one of the most important goals in area of modern biology research. However, algorithms for DNA analysis are usually complicated by mutations caused by an evolution process, which are usually occurred in form of character insertion, deletion and substitution.  With respect to these defects the time complexity of the algorithms grows and limits their practical usage. Techniques for an acceleration of the key operations using specific circuits bring a certain expectation into this area.  The designed circuits are able to achieve the speedup in orders of thousands in comparison to the most powerful conventional processors.  Despite of huge performance of these circuits they are not used in wide range of real word applications.  The main reason lies in often variability of input tasks that leads to change of architecture sizes with respect to the target platform properties. These modifications usually require an interventio

Druh

J_x - Nezařazeno - Článek v odborném periodiku (Jimp, Jsc a Jost)

CEP obor

IN - Informatika

OECD FORD obor

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Projekt

<a href="/cs/project/GA204%2F08%2F1560" target="_blank" >GA204/08/1560: Bioinformatická a experimentální identifikace nekanonických struktur v genomové DNA</a><br>

Návaznosti

Z - Vyzkumny zamer (s odkazem do CEZ)

Rok uplatnění

2010

Kód důvěrnosti údajů

S - Úplné a pravdivé údaje o projektu nepodléhají ochraně podle zvláštních právních předpisů

Název periodika

Information Sciences and Technologies Bulletin of the ACM Slovakia

ISSN

1338-1237

e-ISSN

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Svazek periodika

2

Číslo periodika v rámci svazku

2

Stát vydavatele periodika

SK - Slovenská republika

Počet stran výsledku

10

Strana od-do

93-102

Kód UT WoS článku

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EID výsledku v databázi Scopus

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